Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.3■□□□□ 0.36
SHMT2P34897 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
SHMT2P34897 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SHMT2P34897 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
SHMT2P34897 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SHMT2P34897 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SHMT2P34897 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.29■□□□□ 0.36
SHMT2P34897 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SHMT2P34897 KRT8P47-201ENST00000604727 1398 ntBASIC17.29■□□□□ 0.36
SHMT2P34897 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SHMT2P34897 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.29■□□□□ 0.36
SHMT2P34897 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.29■□□□□ 0.36
SHMT2P34897 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
SHMT2P34897 DUSP5P1-201ENST00000441325 1139 ntBASIC17.29■□□□□ 0.36
SHMT2P34897 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.29■□□□□ 0.36
SHMT2P34897 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.29■□□□□ 0.36
SHMT2P34897 AC096582.2-201ENST00000510860 516 ntBASIC17.29■□□□□ 0.36
SHMT2P34897 FOSL1P1-201ENST00000511041 816 ntBASIC17.29■□□□□ 0.36
SHMT2P34897 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.29■□□□□ 0.36
SHMT2P34897 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.29■□□□□ 0.36
SHMT2P34897 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
SHMT2P34897 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.29■□□□□ 0.36
SHMT2P34897 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.29■□□□□ 0.36
SHMT2P34897 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.29■□□□□ 0.36
SHMT2P34897 AC012313.10-201ENST00000623509 926 ntBASIC17.29■□□□□ 0.36
SHMT2P34897 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.29■□□□□ 0.36
SHMT2P34897 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
SHMT2P34897 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SHMT2P34897 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.29■□□□□ 0.36
SHMT2P34897 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
SHMT2P34897 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHMT2P34897 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.28■□□□□ 0.36
SHMT2P34897 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
SHMT2P34897 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SHMT2P34897 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 AC097374.2-201ENST00000618617 1306 ntBASIC17.28■□□□□ 0.36
SHMT2P34897 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.28■□□□□ 0.36
SHMT2P34897 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.28■□□□□ 0.36
SHMT2P34897 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.28■□□□□ 0.36
SHMT2P34897 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.28■□□□□ 0.36
SHMT2P34897 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.28■□□□□ 0.36
SHMT2P34897 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.28■□□□□ 0.36
SHMT2P34897 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.28■□□□□ 0.36
SHMT2P34897 BNIP3P18-201ENST00000593976 575 ntBASIC17.28■□□□□ 0.36
SHMT2P34897 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.28■□□□□ 0.36
SHMT2P34897 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
SHMT2P34897 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SHMT2P34897 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.28■□□□□ 0.36
SHMT2P34897 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHMT2P34897 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.28■□□□□ 0.36
SHMT2P34897 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SHMT2P34897 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 AC084018.2-201ENST00000613093 2607 ntBASIC17.27■□□□□ 0.36
SHMT2P34897 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms