Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.59■□□□□ 0.41
MSH3P20585 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.59■□□□□ 0.41
MSH3P20585 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
MSH3P20585 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
MSH3P20585 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSH3P20585 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSH3P20585 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.58■□□□□ 0.41
MSH3P20585 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
MSH3P20585 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSH3P20585 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
MSH3P20585 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.58■□□□□ 0.4
MSH3P20585 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
MSH3P20585 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.58■□□□□ 0.4
MSH3P20585 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.58■□□□□ 0.4
MSH3P20585 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
MSH3P20585 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
MSH3P20585 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.58■□□□□ 0.4
MSH3P20585 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
MSH3P20585 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSH3P20585 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
MSH3P20585 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
MSH3P20585 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
MSH3P20585 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.57■□□□□ 0.4
MSH3P20585 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.57■□□□□ 0.4
MSH3P20585 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
MSH3P20585 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
MSH3P20585 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.57■□□□□ 0.4
MSH3P20585 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.57■□□□□ 0.4
MSH3P20585 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.57■□□□□ 0.4
MSH3P20585 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.57■□□□□ 0.4
MSH3P20585 AC096582.2-201ENST00000510860 516 ntBASIC17.57■□□□□ 0.4
MSH3P20585 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.57■□□□□ 0.4
MSH3P20585 PRELID1P1-202ENST00000567272 903 ntBASIC17.57■□□□□ 0.4
MSH3P20585 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.57■□□□□ 0.4
MSH3P20585 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.57■□□□□ 0.4
MSH3P20585 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.57■□□□□ 0.4
MSH3P20585 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.57■□□□□ 0.4
MSH3P20585 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.57■□□□□ 0.4
MSH3P20585 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
MSH3P20585 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.57■□□□□ 0.4
MSH3P20585 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH3P20585 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.56■□□□□ 0.4
MSH3P20585 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
MSH3P20585 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
MSH3P20585 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.56■□□□□ 0.4
MSH3P20585 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.56■□□□□ 0.4
MSH3P20585 AC007967.3-201ENST00000434308 558 ntBASIC17.56■□□□□ 0.4
MSH3P20585 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.56■□□□□ 0.4
MSH3P20585 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.56■□□□□ 0.4
MSH3P20585 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.56■□□□□ 0.4
MSH3P20585 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.56■□□□□ 0.4
MSH3P20585 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms