Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 AL353593.2-201ENST00000602529 1483 ntBASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 ESPNP-201ENST00000270691 2015 ntBASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 AC097493.3-201ENST00000509725 367 ntBASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 AC009118.2-201ENST00000613275 655 ntBASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 FAM86C2P-203ENST00000528684 1004 ntBASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 SNX12-206ENST00000622259 661 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
COL6A6A6NMZ7 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 MRPS18AP1-201ENST00000414458 589 ntBASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A6A6NMZ7 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms