Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 CYP2D8P-201ENST00000433633 1490 ntBASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMARCAL1Q9NZC9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 AC009947.2-201ENST00000444014 672 ntBASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 CCR12P-201ENST00000446203 998 ntBASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 NAPSB-206ENST00000562112 1266 ntBASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 LINC01451-201ENST00000623792 534 ntBASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 AC046158.3-201ENST00000624947 2558 ntBASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
SMARCAL1Q9NZC9 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 AC116562.4-202ENST00000641738 218 ntBASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SMARCAL1Q9NZC9 LYSMD4-203ENST00000378904 2122 ntBASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCAL1Q9NZC9 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms