Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 UPK3BP1-201ENST00000428678 509 ntBASIC13.67□□□□□ -0.22
CCDC140Q96MF4 KRT17P6-201ENST00000453795 1220 ntBASIC13.67□□□□□ -0.22
CCDC140Q96MF4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 AC009533.2-201ENST00000543664 586 ntBASIC13.67□□□□□ -0.22
CCDC140Q96MF4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 NSUN5P1-202ENST00000421140 1535 ntBASIC13.67□□□□□ -0.22
CCDC140Q96MF4 NSUN5P2-203ENST00000457352 1529 ntBASIC13.67□□□□□ -0.22
CCDC140Q96MF4 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 AC139713.2-201ENST00000641328 2723 ntBASIC13.67□□□□□ -0.22
CCDC140Q96MF4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC140Q96MF4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 FAM220CP-201ENST00000395253 831 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 IGHV3-47-201ENST00000425060 335 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 MINOS1P3-201ENST00000457048 203 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 AC002558.1-201ENST00000488906 803 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 AC122714.2-201ENST00000502787 707 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 AP000867.3-201ENST00000524675 377 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 AC074051.2-201ENST00000565115 352 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 AC019129.2-201ENST00000609837 1235 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 AC141586.5-201ENST00000624546 2050 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC140Q96MF4 SIRPAP1-201ENST00000448467 1770 ntBASIC13.66□□□□□ -0.22
CCDC140Q96MF4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CCDC140Q96MF4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms