Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HPS3Q969F9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
HPS3Q969F9 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HPS3Q969F9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HPS3Q969F9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HPS3Q969F9 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HPS3Q969F9 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.57■□□□□ 0.72
HPS3Q969F9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HPS3Q969F9 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
HPS3Q969F9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.56■□□□□ 0.72
HPS3Q969F9 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.56■□□□□ 0.72
HPS3Q969F9 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.56■□□□□ 0.72
HPS3Q969F9 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.56■□□□□ 0.72
HPS3Q969F9 TOB2P1-201ENST00000469761 992 ntBASIC19.56■□□□□ 0.72
HPS3Q969F9 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.56■□□□□ 0.72
HPS3Q969F9 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.56■□□□□ 0.72
HPS3Q969F9 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
HPS3Q969F9 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 AC092119.3-201ENST00000612618 583 ntBASIC19.56■□□□□ 0.72
HPS3Q969F9 NPAP1P7-201ENST00000613027 823 ntBASIC19.56■□□□□ 0.72
HPS3Q969F9 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.56■□□□□ 0.72
HPS3Q969F9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 AC233702.3-201ENST00000578656 1387 ntBASIC19.56■□□□□ 0.72
HPS3Q969F9 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HPS3Q969F9 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 AC097374.2-201ENST00000618617 1306 ntBASIC19.55■□□□□ 0.72
HPS3Q969F9 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.55■□□□□ 0.72
HPS3Q969F9 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.55■□□□□ 0.72
HPS3Q969F9 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
HPS3Q969F9 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
HPS3Q969F9 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
HPS3Q969F9 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.55■□□□□ 0.72
HPS3Q969F9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.55■□□□□ 0.72
HPS3Q969F9 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.55■□□□□ 0.72
HPS3Q969F9 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.55■□□□□ 0.72
HPS3Q969F9 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.55■□□□□ 0.72
HPS3Q969F9 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.55■□□□□ 0.72
HPS3Q969F9 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.55■□□□□ 0.72
HPS3Q969F9 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
HPS3Q969F9 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
HPS3Q969F9 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.55■□□□□ 0.72
HPS3Q969F9 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
HPS3Q969F9 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
HPS3Q969F9 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.55■□□□□ 0.72
HPS3Q969F9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
HPS3Q969F9 LYSMD4-203ENST00000378904 2122 ntBASIC19.55■□□□□ 0.72
HPS3Q969F9 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
HPS3Q969F9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.55■□□□□ 0.72
HPS3Q969F9 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.55■□□□□ 0.72
HPS3Q969F9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HPS3Q969F9 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.54■□□□□ 0.72
HPS3Q969F9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.54■□□□□ 0.72
HPS3Q969F9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.54■□□□□ 0.72
HPS3Q969F9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.54■□□□□ 0.72
HPS3Q969F9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.54■□□□□ 0.72
HPS3Q969F9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.54■□□□□ 0.72
HPS3Q969F9 AL138688.1-201ENST00000624851 1594 ntBASIC19.54■□□□□ 0.72
HPS3Q969F9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 COX5BP2-201ENST00000392354 334 ntBASIC19.54■□□□□ 0.72
HPS3Q969F9 LINC00265-3P-201ENST00000447588 903 ntBASIC19.54■□□□□ 0.72
HPS3Q969F9 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.54■□□□□ 0.72
HPS3Q969F9 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.54■□□□□ 0.72
HPS3Q969F9 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HPS3Q969F9 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.54■□□□□ 0.72
HPS3Q969F9 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms