Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 FLJ16779-201ENST00000612722 7638 ntBASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28AQ8IWP9 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 SNX18-202ENST00000343017 3140 ntBASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 AC023632.3-201ENST00000521633 145 ntBASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 MFSD11-216ENST00000590393 1141 ntBASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 AL138688.1-201ENST00000624851 1594 ntBASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28AQ8IWP9 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 AC018553.1-201ENST00000616682 1458 ntBASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 AC007322.1-201ENST00000426983 750 ntBASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 AC006015.1-201ENST00000429970 570 ntBASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 AC100791.3-201ENST00000617619 330 ntBASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
CCDC28AQ8IWP9 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC28AQ8IWP9 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms