Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 TPM4P1-201ENST00000436100 807 ntBASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 AC124864.1-201ENST00000623408 392 ntBASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 GUSBP12-201ENST00000513727 720 ntBASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD3Q3KNS1 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 REXO1L11P-201ENST00000620964 1927 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 AC133963.1-201ENST00000504166 1679 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 NUS1P1-201ENST00000446295 882 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 RN7SL606P-201ENST00000472779 293 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 AC104819.1-201ENST00000504587 486 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 UNC93B7-201ENST00000509439 705 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 FOSL1P1-201ENST00000511041 816 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 AC074051.2-201ENST00000565115 352 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 AC012615.1-201ENST00000565797 1299 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 AL732292.2-201ENST00000609649 430 ntBASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD3Q3KNS1 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 LINC00304-203ENST00000565008 1864 ntBASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 OR6D1P-202ENST00000641007 5290 ntBASIC17.27■□□□□ 0.35
PTCHD3Q3KNS1 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms