Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL589182.2-201ENST00000619332 1049 ntBASIC18.83■□□□□ 0.6
SOX4Q06945 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX4Q06945 AC006116.8-202ENST00000587620 1550 ntBASIC18.83■□□□□ 0.6
SOX4Q06945 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX4Q06945 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.83■□□□□ 0.6
SOX4Q06945 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
SOX4Q06945 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX4Q06945 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX4Q06945 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX4Q06945 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX4Q06945 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX4Q06945 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX4Q06945 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.82■□□□□ 0.6
SOX4Q06945 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX4Q06945 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
SOX4Q06945 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SOX4Q06945 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.82■□□□□ 0.6
SOX4Q06945 PMS2P1-201ENST00000431037 1228 ntBASIC18.82■□□□□ 0.6
SOX4Q06945 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.82■□□□□ 0.6
SOX4Q06945 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SOX4Q06945 SIGLEC30P-201ENST00000455569 941 ntBASIC18.82■□□□□ 0.6
SOX4Q06945 POLD2P1-201ENST00000511220 997 ntBASIC18.82■□□□□ 0.6
SOX4Q06945 UNC93B6-202ENST00000528242 690 ntBASIC18.82■□□□□ 0.6
SOX4Q06945 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.82■□□□□ 0.6
SOX4Q06945 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.82■□□□□ 0.6
SOX4Q06945 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
SOX4Q06945 AC004706.3-202ENST00000621574 984 ntBASIC18.82■□□□□ 0.6
SOX4Q06945 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX4Q06945 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.82■□□□□ 0.6
SOX4Q06945 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SOX4Q06945 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX4Q06945 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SOX4Q06945 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.82■□□□□ 0.6
SOX4Q06945 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.81■□□□□ 0.6
SOX4Q06945 AC006504.4-201ENST00000592118 1568 ntBASIC18.81■□□□□ 0.6
SOX4Q06945 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SOX4Q06945 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SOX4Q06945 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SOX4Q06945 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.81■□□□□ 0.6
SOX4Q06945 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.81■□□□□ 0.6
SOX4Q06945 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 ELK2BP-201ENST00000415014 1224 ntBASIC18.81■□□□□ 0.6
SOX4Q06945 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SOX4Q06945 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.81■□□□□ 0.6
SOX4Q06945 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.81■□□□□ 0.6
SOX4Q06945 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.81■□□□□ 0.6
SOX4Q06945 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.81■□□□□ 0.6
SOX4Q06945 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.81■□□□□ 0.6
SOX4Q06945 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SOX4Q06945 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.81■□□□□ 0.6
SOX4Q06945 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.81■□□□□ 0.6
SOX4Q06945 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
SOX4Q06945 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SOX4Q06945 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.81■□□□□ 0.6
SOX4Q06945 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.81■□□□□ 0.6
SOX4Q06945 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.81■□□□□ 0.6
SOX4Q06945 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX4Q06945 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.8■□□□□ 0.6
SOX4Q06945 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SOX4Q06945 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.8■□□□□ 0.6
SOX4Q06945 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SOX4Q06945 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SOX4Q06945 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SOX4Q06945 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.8■□□□□ 0.6
SOX4Q06945 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.8■□□□□ 0.6
SOX4Q06945 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SOX4Q06945 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SOX4Q06945 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.8■□□□□ 0.6
SOX4Q06945 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.8■□□□□ 0.6
SOX4Q06945 KRT18P58-201ENST00000527480 1120 ntBASIC18.8■□□□□ 0.6
SOX4Q06945 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.8■□□□□ 0.6
SOX4Q06945 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SOX4Q06945 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.8■□□□□ 0.6
SOX4Q06945 AC006557.2-201ENST00000592985 1240 ntBASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms