Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
HDAC4P56524 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 AC007967.3-201ENST00000434308 558 ntBASIC18.47■□□□□ 0.55
HDAC4P56524 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.47■□□□□ 0.55
HDAC4P56524 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.47■□□□□ 0.55
HDAC4P56524 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.47■□□□□ 0.55
HDAC4P56524 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.47■□□□□ 0.55
HDAC4P56524 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
HDAC4P56524 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.47■□□□□ 0.55
HDAC4P56524 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
HDAC4P56524 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.47■□□□□ 0.55
HDAC4P56524 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.47■□□□□ 0.55
HDAC4P56524 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.47■□□□□ 0.55
HDAC4P56524 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
HDAC4P56524 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.47■□□□□ 0.55
HDAC4P56524 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.46■□□□□ 0.55
HDAC4P56524 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
HDAC4P56524 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.46■□□□□ 0.55
HDAC4P56524 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
HDAC4P56524 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.46■□□□□ 0.55
HDAC4P56524 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.46■□□□□ 0.55
HDAC4P56524 LINC00265-3P-201ENST00000447588 903 ntBASIC18.46■□□□□ 0.55
HDAC4P56524 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.46■□□□□ 0.55
HDAC4P56524 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.46■□□□□ 0.55
HDAC4P56524 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.46■□□□□ 0.55
HDAC4P56524 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.46■□□□□ 0.55
HDAC4P56524 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.46■□□□□ 0.55
HDAC4P56524 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.46■□□□□ 0.55
HDAC4P56524 AC092119.3-201ENST00000612618 583 ntBASIC18.46■□□□□ 0.55
HDAC4P56524 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HDAC4P56524 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
HDAC4P56524 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.46■□□□□ 0.55
HDAC4P56524 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.46■□□□□ 0.55
HDAC4P56524 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HDAC4P56524 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.46■□□□□ 0.55
HDAC4P56524 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.46■□□□□ 0.55
HDAC4P56524 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
HDAC4P56524 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.54
HDAC4P56524 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.45■□□□□ 0.54
HDAC4P56524 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.45■□□□□ 0.54
HDAC4P56524 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
HDAC4P56524 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.45■□□□□ 0.54
HDAC4P56524 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HDAC4P56524 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
HDAC4P56524 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.45■□□□□ 0.54
HDAC4P56524 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
HDAC4P56524 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.45■□□□□ 0.54
HDAC4P56524 COX5BP2-201ENST00000392354 334 ntBASIC18.45■□□□□ 0.54
HDAC4P56524 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.45■□□□□ 0.54
HDAC4P56524 VENTXP7-201ENST00000475503 772 ntBASIC18.45■□□□□ 0.54
HDAC4P56524 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.45■□□□□ 0.54
HDAC4P56524 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.45■□□□□ 0.54
HDAC4P56524 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HDAC4P56524 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 HLA-J-201ENST00000462773 1622 ntBASIC18.45■□□□□ 0.54
HDAC4P56524 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.45■□□□□ 0.54
HDAC4P56524 PP12613-201ENST00000424958 2230 ntBASIC18.45■□□□□ 0.54
HDAC4P56524 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HDAC4P56524 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDAC4P56524 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HDAC4P56524 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.44■□□□□ 0.54
HDAC4P56524 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.44■□□□□ 0.54
HDAC4P56524 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.44■□□□□ 0.54
HDAC4P56524 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.44■□□□□ 0.54
HDAC4P56524 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.44■□□□□ 0.54
HDAC4P56524 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
HDAC4P56524 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
HDAC4P56524 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms