Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH4P55283 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CDH4P55283 AC079776.2-201ENST00000641154 1609 ntBASIC18.05■□□□□ 0.48
CDH4P55283 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CDH4P55283 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CDH4P55283 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CDH4P55283 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.04■□□□□ 0.48
CDH4P55283 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH4P55283 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
CDH4P55283 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.04■□□□□ 0.48
CDH4P55283 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH4P55283 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 AP002469.2-201ENST00000531724 424 ntBASIC18.04■□□□□ 0.48
CDH4P55283 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.04■□□□□ 0.48
CDH4P55283 STK25P1-201ENST00000585406 838 ntBASIC18.04■□□□□ 0.48
CDH4P55283 AC073592.4-201ENST00000623827 446 ntBASIC18.04■□□□□ 0.48
CDH4P55283 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.04■□□□□ 0.48
CDH4P55283 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CDH4P55283 AC132938.5-201ENST00000624980 1813 ntBASIC18.04■□□□□ 0.48
CDH4P55283 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
CDH4P55283 AC007613.1-201ENST00000572811 2597 ntBASIC18.04■□□□□ 0.48
CDH4P55283 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH4P55283 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH4P55283 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CDH4P55283 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.03■□□□□ 0.48
CDH4P55283 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CDH4P55283 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 AC003669.1-201ENST00000334569 611 ntBASIC18.03■□□□□ 0.48
CDH4P55283 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.03■□□□□ 0.48
CDH4P55283 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH4P55283 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CDH4P55283 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH4P55283 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.03■□□□□ 0.48
CDH4P55283 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH4P55283 TP73-AS1-207ENST00000624167 988 ntBASIC18.03■□□□□ 0.48
CDH4P55283 SIGLEC16-201ENST00000599858 1437 ntBASIC18.03■□□□□ 0.48
CDH4P55283 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDH4P55283 LINC00304-203ENST00000565008 1864 ntBASIC18.03■□□□□ 0.48
CDH4P55283 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.03■□□□□ 0.48
CDH4P55283 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.03■□□□□ 0.48
CDH4P55283 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CDH4P55283 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CDH4P55283 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CDH4P55283 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
CDH4P55283 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CDH4P55283 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 KLF4P1-201ENST00000412782 1185 ntBASIC18.02■□□□□ 0.48
CDH4P55283 SPDYE21P-201ENST00000413323 827 ntBASIC18.02■□□□□ 0.48
CDH4P55283 AC026396.1-201ENST00000419388 421 ntBASIC18.02■□□□□ 0.48
CDH4P55283 AL020989.1-201ENST00000422979 469 ntBASIC18.02■□□□□ 0.48
CDH4P55283 FAM197Y8-203ENST00000450145 560 ntBASIC18.02■□□□□ 0.48
CDH4P55283 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.02■□□□□ 0.48
CDH4P55283 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CDH4P55283 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.02■□□□□ 0.48
CDH4P55283 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.02■□□□□ 0.48
CDH4P55283 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDH4P55283 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CDH4P55283 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH4P55283 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDH4P55283 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
CDH4P55283 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms