Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PCDHA14-201ENST00000506751 2298 ntBASIC17.22■□□□□ 0.35
HDAC3O15379 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.22■□□□□ 0.35
HDAC3O15379 AC018695.7-201ENST00000624587 2492 ntBASIC17.22■□□□□ 0.35
HDAC3O15379 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC3O15379 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HDAC3O15379 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.21■□□□□ 0.35
HDAC3O15379 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
HDAC3O15379 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
HDAC3O15379 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.21■□□□□ 0.35
HDAC3O15379 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 AC116353.5-201ENST00000638148 1699 ntBASIC17.21■□□□□ 0.35
HDAC3O15379 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HDAC3O15379 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HDAC3O15379 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HDAC3O15379 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
HDAC3O15379 AC005104.2-201ENST00000427818 678 ntBASIC17.21■□□□□ 0.35
HDAC3O15379 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.21■□□□□ 0.35
HDAC3O15379 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.21■□□□□ 0.35
HDAC3O15379 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
HDAC3O15379 EGLN1P1-201ENST00000531623 762 ntBASIC17.21■□□□□ 0.35
HDAC3O15379 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.21■□□□□ 0.35
HDAC3O15379 NEK4P2-201ENST00000580004 1012 ntBASIC17.21■□□□□ 0.35
HDAC3O15379 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.21■□□□□ 0.35
HDAC3O15379 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.21■□□□□ 0.35
HDAC3O15379 Z99916.2-201ENST00000604037 246 ntBASIC17.21■□□□□ 0.35
HDAC3O15379 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HDAC3O15379 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
HDAC3O15379 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HDAC3O15379 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HDAC3O15379 BX276092.7-203ENST00000637198 1536 ntBASIC17.21■□□□□ 0.34
HDAC3O15379 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HDAC3O15379 PCDHB19P-201ENST00000570871 2371 ntBASIC17.21■□□□□ 0.34
HDAC3O15379 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.34
HDAC3O15379 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HDAC3O15379 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HDAC3O15379 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
HDAC3O15379 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.2■□□□□ 0.34
HDAC3O15379 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.2■□□□□ 0.34
HDAC3O15379 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HDAC3O15379 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 MIR1238-201ENST00000408483 83 ntBASIC17.2■□□□□ 0.34
HDAC3O15379 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.2■□□□□ 0.34
HDAC3O15379 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.2■□□□□ 0.34
HDAC3O15379 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
HDAC3O15379 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.2■□□□□ 0.34
HDAC3O15379 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.2■□□□□ 0.34
HDAC3O15379 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
HDAC3O15379 AL512604.3-201ENST00000569583 964 ntBASIC17.2■□□□□ 0.34
HDAC3O15379 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.2■□□□□ 0.34
HDAC3O15379 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.2■□□□□ 0.34
HDAC3O15379 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HDAC3O15379 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HDAC3O15379 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HDAC3O15379 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HDAC3O15379 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC3O15379 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.19■□□□□ 0.34
HDAC3O15379 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HDAC3O15379 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HDAC3O15379 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC3O15379 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HDAC3O15379 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC3O15379 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC3O15379 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC3O15379 TSPY20P-201ENST00000450910 630 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms