Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 TSPY15P-201ENST00000457163 923 ntBASIC13.29□□□□□ -0.28
LINC00477Q96M19 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 TMA16-209ENST00000513272 803 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 GXYLT1P4-201ENST00000613576 1192 ntBASIC13.29□□□□□ -0.28
LINC00477Q96M19 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 BOC-212ENST00000485230 2173 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 BANP-227ENST00000626016 2144 ntTSL 2 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 KRT18P48-201ENST00000434763 852 ntBASIC13.28□□□□□ -0.28
LINC00477Q96M19 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 CD81-212ENST00000526072 1172 ntTSL 5 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 GCSHP2-201ENST00000560971 527 ntBASIC13.28□□□□□ -0.28
LINC00477Q96M19 USF2-205ENST00000594064 1179 ntTSL 2 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 AC009154.2-201ENST00000621177 724 ntBASIC13.28□□□□□ -0.28
LINC00477Q96M19 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC13.28□□□□□ -0.28
LINC00477Q96M19 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
LINC00477Q96M19 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.27□□□□□ -0.28
LINC00477Q96M19 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
LINC00477Q96M19 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.28
LINC00477Q96M19 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
LINC00477Q96M19 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 AL138966.2-201ENST00000621997 464 ntBASIC13.27□□□□□ -0.29
LINC00477Q96M19 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms