Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 DRAXINP1-201ENST00000437611 948 ntBASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 AC090616.6-201ENST00000582640 721 ntBASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 AL691432.3-201ENST00000621860 400 ntBASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTCHD3Q3KNS1 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PTCHD3Q3KNS1 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 DDX43P3-201ENST00000441064 443 ntBASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 AL592071.1-201ENST00000611956 408 ntBASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD3Q3KNS1 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.29■□□□□ 0.36
PTCHD3Q3KNS1 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms