Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SUMO3P55854 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.03■□□□□ 0.16
SUMO3P55854 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SUMO3P55854 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SUMO3P55854 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
SUMO3P55854 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.02■□□□□ 0.16
SUMO3P55854 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SUMO3P55854 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.02■□□□□ 0.16
SUMO3P55854 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SUMO3P55854 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SUMO3P55854 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.02■□□□□ 0.16
SUMO3P55854 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
SUMO3P55854 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SUMO3P55854 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SUMO3P55854 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.02■□□□□ 0.16
SUMO3P55854 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SUMO3P55854 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SUMO3P55854 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.02■□□□□ 0.16
SUMO3P55854 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SUMO3P55854 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.16
SUMO3P55854 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.02■□□□□ 0.16
SUMO3P55854 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.02■□□□□ 0.16
SUMO3P55854 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.02■□□□□ 0.16
SUMO3P55854 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.02■□□□□ 0.16
SUMO3P55854 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.02■□□□□ 0.16
SUMO3P55854 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
SUMO3P55854 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.02■□□□□ 0.16
SUMO3P55854 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SUMO3P55854 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.02■□□□□ 0.15
SUMO3P55854 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SUMO3P55854 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SUMO3P55854 AC067852.2-201ENST00000590513 2313 ntBASIC16.02■□□□□ 0.15
SUMO3P55854 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.02■□□□□ 0.15
SUMO3P55854 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SUMO3P55854 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SUMO3P55854 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
SUMO3P55854 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.02■□□□□ 0.15
SUMO3P55854 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SUMO3P55854 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.02■□□□□ 0.15
SUMO3P55854 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SUMO3P55854 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SUMO3P55854 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.02■□□□□ 0.15
SUMO3P55854 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
SUMO3P55854 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SUMO3P55854 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
SUMO3P55854 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
SUMO3P55854 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SUMO3P55854 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SUMO3P55854 RCN1P2-201ENST00000398357 915 ntBASIC16.01■□□□□ 0.15
SUMO3P55854 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SUMO3P55854 NUS1P2-201ENST00000417358 873 ntBASIC16.01■□□□□ 0.15
SUMO3P55854 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SUMO3P55854 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.01■□□□□ 0.15
SUMO3P55854 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.01■□□□□ 0.15
SUMO3P55854 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.01■□□□□ 0.15
SUMO3P55854 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.01■□□□□ 0.15
SUMO3P55854 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.01■□□□□ 0.15
SUMO3P55854 AC109462.3-201ENST00000573934 613 ntBASIC16.01■□□□□ 0.15
SUMO3P55854 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.01■□□□□ 0.15
SUMO3P55854 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SUMO3P55854 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.01■□□□□ 0.15
SUMO3P55854 AL139327.4-201ENST00000612362 153 ntBASIC16.01■□□□□ 0.15
SUMO3P55854 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.01■□□□□ 0.15
SUMO3P55854 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 AL353593.2-201ENST00000602529 1483 ntBASIC16.01■□□□□ 0.15
SUMO3P55854 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.01■□□□□ 0.15
SUMO3P55854 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.01■□□□□ 0.15
SUMO3P55854 LINC00896-202ENST00000609602 2128 ntBASIC16.01■□□□□ 0.15
SUMO3P55854 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SUMO3P55854 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SUMO3P55854 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
SUMO3P55854 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SUMO3P55854 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16■□□□□ 0.15
SUMO3P55854 AL049757.1-201ENST00000616842 1596 ntBASIC16■□□□□ 0.15
SUMO3P55854 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
SUMO3P55854 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16■□□□□ 0.15
SUMO3P55854 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SUMO3P55854 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SUMO3P55854 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16■□□□□ 0.15
SUMO3P55854 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SUMO3P55854 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16■□□□□ 0.15
SUMO3P55854 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SUMO3P55854 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SUMO3P55854 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16■□□□□ 0.15
SUMO3P55854 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16■□□□□ 0.15
SUMO3P55854 AC138894.3-201ENST00000603787 634 ntBASIC16■□□□□ 0.15
SUMO3P55854 AL121772.3-201ENST00000610840 674 ntBASIC16■□□□□ 0.15
SUMO3P55854 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
SUMO3P55854 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms