Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MRE11P49959 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MRE11P49959 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.65■□□□□ 0.9
MRE11P49959 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
MRE11P49959 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC20.65■□□□□ 0.9
MRE11P49959 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
MRE11P49959 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 HTR7P1-201ENST00000538670 1336 ntBASIC20.65■□□□□ 0.9
MRE11P49959 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.65■□□□□ 0.9
MRE11P49959 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.65■□□□□ 0.9
MRE11P49959 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.65■□□□□ 0.9
MRE11P49959 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.65■□□□□ 0.9
MRE11P49959 RBM17P1-201ENST00000453646 1190 ntBASIC20.65■□□□□ 0.9
MRE11P49959 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.65■□□□□ 0.9
MRE11P49959 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.65■□□□□ 0.9
MRE11P49959 NAPSB-206ENST00000562112 1266 ntBASIC20.65■□□□□ 0.9
MRE11P49959 AL160286.2-201ENST00000567150 934 ntBASIC20.65■□□□□ 0.9
MRE11P49959 AC005829.2-201ENST00000571422 1056 ntBASIC20.65■□□□□ 0.9
MRE11P49959 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.65■□□□□ 0.9
MRE11P49959 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.65■□□□□ 0.9
MRE11P49959 AC023511.2-201ENST00000618803 211 ntBASIC20.65■□□□□ 0.9
MRE11P49959 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC20.65■□□□□ 0.9
MRE11P49959 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
MRE11P49959 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.65■□□□□ 0.9
MRE11P49959 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
MRE11P49959 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 AC026691.1-201ENST00000602502 2017 ntBASIC20.65■□□□□ 0.9
MRE11P49959 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.65■□□□□ 0.9
MRE11P49959 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.65■□□□□ 0.9
MRE11P49959 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
MRE11P49959 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MRE11P49959 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
MRE11P49959 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MRE11P49959 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MRE11P49959 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.9
MRE11P49959 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MRE11P49959 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MRE11P49959 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.64■□□□□ 0.9
MRE11P49959 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC20.64■□□□□ 0.9
MRE11P49959 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
MRE11P49959 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.64■□□□□ 0.89
MRE11P49959 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
MRE11P49959 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
MRE11P49959 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.64■□□□□ 0.89
MRE11P49959 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.64■□□□□ 0.89
MRE11P49959 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.64■□□□□ 0.89
MRE11P49959 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.64■□□□□ 0.89
MRE11P49959 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
MRE11P49959 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
MRE11P49959 AP000525.1-201ENST00000608286 694 ntBASIC20.64■□□□□ 0.89
MRE11P49959 AC006011.2-201ENST00000621313 1158 ntBASIC20.64■□□□□ 0.89
MRE11P49959 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.64■□□□□ 0.89
MRE11P49959 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.64■□□□□ 0.89
MRE11P49959 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
MRE11P49959 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.64■□□□□ 0.89
MRE11P49959 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
MRE11P49959 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.64■□□□□ 0.89
MRE11P49959 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
MRE11P49959 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
MRE11P49959 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MRE11P49959 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MRE11P49959 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
MRE11P49959 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
MRE11P49959 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MRE11P49959 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.63■□□□□ 0.89
MRE11P49959 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
MRE11P49959 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC20.63■□□□□ 0.89
MRE11P49959 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
MRE11P49959 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MRE11P49959 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MRE11P49959 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MRE11P49959 MIR1238-201ENST00000408483 83 ntBASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms