Protein–RNA interactions for Protein: P18206

VCL, Vinculin, humanhuman

Predictions only

Length 1,134 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCLP18206 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.82■□□□□ 0.44
VCLP18206 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.82■□□□□ 0.44
VCLP18206 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.82■□□□□ 0.44
VCLP18206 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VCLP18206 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
VCLP18206 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.82■□□□□ 0.44
VCLP18206 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.82■□□□□ 0.44
VCLP18206 ATP5G2P1-201ENST00000433580 426 ntBASIC17.82■□□□□ 0.44
VCLP18206 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.82■□□□□ 0.44
VCLP18206 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 AC004263.2-201ENST00000617183 678 ntBASIC17.82■□□□□ 0.44
VCLP18206 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.82■□□□□ 0.44
VCLP18206 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.82■□□□□ 0.44
VCLP18206 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
VCLP18206 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.82■□□□□ 0.44
VCLP18206 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VCLP18206 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
VCLP18206 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.81■□□□□ 0.44
VCLP18206 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.81■□□□□ 0.44
VCLP18206 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VCLP18206 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 KRT18P1-202ENST00000452408 1331 ntBASIC17.81■□□□□ 0.44
VCLP18206 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.81■□□□□ 0.44
VCLP18206 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
VCLP18206 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
VCLP18206 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.81■□□□□ 0.44
VCLP18206 TSPY12P-201ENST00000421279 868 ntBASIC17.81■□□□□ 0.44
VCLP18206 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.81■□□□□ 0.44
VCLP18206 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.81■□□□□ 0.44
VCLP18206 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
VCLP18206 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
VCLP18206 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.81■□□□□ 0.44
VCLP18206 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
VCLP18206 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.81■□□□□ 0.44
VCLP18206 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VCLP18206 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.81■□□□□ 0.44
VCLP18206 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.81■□□□□ 0.44
VCLP18206 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VCLP18206 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
VCLP18206 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
VCLP18206 AC093010.1-201ENST00000473625 1624 ntBASIC17.8■□□□□ 0.44
VCLP18206 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
VCLP18206 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 SLC25A6P5-201ENST00000435663 894 ntBASIC17.8■□□□□ 0.44
VCLP18206 HCG4P8-203ENST00000443049 980 ntBASIC17.8■□□□□ 0.44
VCLP18206 VENTXP7-201ENST00000475503 772 ntBASIC17.8■□□□□ 0.44
VCLP18206 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.8■□□□□ 0.44
VCLP18206 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.8■□□□□ 0.44
VCLP18206 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VCLP18206 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.8■□□□□ 0.44
VCLP18206 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms