Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
HOXC11O43248 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
HOXC11O43248 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
HOXC11O43248 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
HOXC11O43248 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HOXC11O43248 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.96■□□□□ 0.47
HOXC11O43248 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC11O43248 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.96■□□□□ 0.47
HOXC11O43248 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC11O43248 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.96■□□□□ 0.47
HOXC11O43248 AC108751.1-201ENST00000490852 363 ntBASIC17.96■□□□□ 0.47
HOXC11O43248 RNA5SP416-201ENST00000516838 111 ntBASIC17.96■□□□□ 0.47
HOXC11O43248 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC11O43248 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC11O43248 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HOXC11O43248 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HOXC11O43248 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC11O43248 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HOXC11O43248 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HOXC11O43248 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.96■□□□□ 0.47
HOXC11O43248 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
HOXC11O43248 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
HOXC11O43248 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
HOXC11O43248 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
HOXC11O43248 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.95■□□□□ 0.46
HOXC11O43248 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.95■□□□□ 0.46
HOXC11O43248 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC11O43248 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HOXC11O43248 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HOXC11O43248 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HOXC11O43248 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
HOXC11O43248 MYCLP1-201ENST00000372451 1075 ntBASIC17.95■□□□□ 0.46
HOXC11O43248 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 STK19B-204ENST00000512515 211 ntBASIC17.95■□□□□ 0.46
HOXC11O43248 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC11O43248 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.95■□□□□ 0.46
HOXC11O43248 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.95■□□□□ 0.46
HOXC11O43248 AC040169.1-201ENST00000565382 521 ntBASIC17.95■□□□□ 0.46
HOXC11O43248 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.95■□□□□ 0.46
HOXC11O43248 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.95■□□□□ 0.46
HOXC11O43248 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.95■□□□□ 0.46
HOXC11O43248 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.95■□□□□ 0.46
HOXC11O43248 AL139424.1-201ENST00000607572 797 ntBASIC17.95■□□□□ 0.46
HOXC11O43248 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.95■□□□□ 0.46
HOXC11O43248 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 AC006504.4-201ENST00000592118 1568 ntBASIC17.95■□□□□ 0.46
HOXC11O43248 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
HOXC11O43248 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.94■□□□□ 0.46
HOXC11O43248 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
HOXC11O43248 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC11O43248 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC11O43248 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.94■□□□□ 0.46
HOXC11O43248 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.94■□□□□ 0.46
HOXC11O43248 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HOXC11O43248 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms