Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.24■□□□□ 0.35
HDAC3O15379 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HDAC3O15379 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC3O15379 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HDAC3O15379 LYSMD4-203ENST00000378904 2122 ntBASIC17.24■□□□□ 0.35
HDAC3O15379 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.24■□□□□ 0.35
HDAC3O15379 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.24■□□□□ 0.35
HDAC3O15379 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.24■□□□□ 0.35
HDAC3O15379 AC105020.1-201ENST00000435356 2205 ntBASIC17.24■□□□□ 0.35
HDAC3O15379 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
HDAC3O15379 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.24■□□□□ 0.35
HDAC3O15379 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC3O15379 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC3O15379 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC3O15379 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.23■□□□□ 0.35
HDAC3O15379 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC3O15379 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 UBALD1-205ENST00000590891 2641 ntBASIC17.23■□□□□ 0.35
HDAC3O15379 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.23■□□□□ 0.35
HDAC3O15379 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.23■□□□□ 0.35
HDAC3O15379 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HDAC3O15379 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 TSPY14P-201ENST00000303979 915 ntBASIC17.23■□□□□ 0.35
HDAC3O15379 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC3O15379 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.23■□□□□ 0.35
HDAC3O15379 GCSHP5-201ENST00000443090 522 ntBASIC17.23■□□□□ 0.35
HDAC3O15379 AL158047.1-201ENST00000445918 881 ntBASIC17.23■□□□□ 0.35
HDAC3O15379 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.23■□□□□ 0.35
HDAC3O15379 AC098590.1-201ENST00000468126 897 ntBASIC17.23■□□□□ 0.35
HDAC3O15379 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC3O15379 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.23■□□□□ 0.35
HDAC3O15379 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.23■□□□□ 0.35
HDAC3O15379 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.23■□□□□ 0.35
HDAC3O15379 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC3O15379 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.23■□□□□ 0.35
HDAC3O15379 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HDAC3O15379 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HDAC3O15379 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.23■□□□□ 0.35
HDAC3O15379 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HDAC3O15379 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HDAC3O15379 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC3O15379 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDAC3O15379 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.23■□□□□ 0.35
HDAC3O15379 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HDAC3O15379 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HDAC3O15379 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC3O15379 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC3O15379 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC3O15379 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC3O15379 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HDAC3O15379 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.22■□□□□ 0.35
HDAC3O15379 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.22■□□□□ 0.35
HDAC3O15379 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
HDAC3O15379 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.22■□□□□ 0.35
HDAC3O15379 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.22■□□□□ 0.35
HDAC3O15379 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.22■□□□□ 0.35
HDAC3O15379 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.22■□□□□ 0.35
HDAC3O15379 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.22■□□□□ 0.35
HDAC3O15379 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.22■□□□□ 0.35
HDAC3O15379 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HDAC3O15379 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.22■□□□□ 0.35
HDAC3O15379 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDAC3O15379 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms