Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 AC010460.3-201ENST00000511359 1579 ntBASIC17.61■□□□□ 0.41
VPS35Q96QK1 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS35Q96QK1 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS35Q96QK1 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 COX5BP2-201ENST00000392354 334 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 FAM220CP-201ENST00000395253 831 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 TSPY19P-201ENST00000418461 509 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 TSPY18P-201ENST00000441642 509 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 KRT16P4-201ENST00000453883 522 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 AC122714.2-201ENST00000502787 707 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 FOSL1P1-201ENST00000511041 816 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 AC138894.3-201ENST00000603787 634 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 AL121772.3-201ENST00000610840 674 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 BX276092.7-203ENST00000637198 1536 ntBASIC17.6■□□□□ 0.41
VPS35Q96QK1 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS35Q96QK1 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
VPS35Q96QK1 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS35Q96QK1 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS35Q96QK1 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 INTS4P1-201ENST00000438455 1935 ntBASIC17.59■□□□□ 0.41
VPS35Q96QK1 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS35Q96QK1 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS35Q96QK1 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS35Q96QK1 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS35Q96QK1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS35Q96QK1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS35Q96QK1 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.59■□□□□ 0.41
VPS35Q96QK1 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.59■□□□□ 0.41
VPS35Q96QK1 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms