Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.3■□□□□ 0.84
SMARCA1P28370 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SMARCA1P28370 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.3■□□□□ 0.84
SMARCA1P28370 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SMARCA1P28370 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SMARCA1P28370 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.3■□□□□ 0.84
SMARCA1P28370 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.3■□□□□ 0.84
SMARCA1P28370 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
SMARCA1P28370 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCA1P28370 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.29■□□□□ 0.84
SMARCA1P28370 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.29■□□□□ 0.84
SMARCA1P28370 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.29■□□□□ 0.84
SMARCA1P28370 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
SMARCA1P28370 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.29■□□□□ 0.84
SMARCA1P28370 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.29■□□□□ 0.84
SMARCA1P28370 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.29■□□□□ 0.84
SMARCA1P28370 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.29■□□□□ 0.84
SMARCA1P28370 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.29■□□□□ 0.84
SMARCA1P28370 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.29■□□□□ 0.84
SMARCA1P28370 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SMARCA1P28370 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.29■□□□□ 0.84
SMARCA1P28370 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.29■□□□□ 0.84
SMARCA1P28370 NKAPP1-205ENST00000585790 367 ntBASIC20.29■□□□□ 0.84
SMARCA1P28370 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SMARCA1P28370 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.29■□□□□ 0.84
SMARCA1P28370 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SMARCA1P28370 AC009336.1-201ENST00000608941 1553 ntBASIC20.29■□□□□ 0.84
SMARCA1P28370 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 AC134043.2-201ENST00000624206 2238 ntBASIC20.29■□□□□ 0.84
SMARCA1P28370 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCA1P28370 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.28■□□□□ 0.84
SMARCA1P28370 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SMARCA1P28370 AL355312.1-201ENST00000407115 2176 ntBASIC20.28■□□□□ 0.84
SMARCA1P28370 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.28■□□□□ 0.84
SMARCA1P28370 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SMARCA1P28370 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
SMARCA1P28370 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.28■□□□□ 0.84
SMARCA1P28370 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.28■□□□□ 0.84
SMARCA1P28370 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.28■□□□□ 0.84
SMARCA1P28370 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.28■□□□□ 0.84
SMARCA1P28370 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.28■□□□□ 0.84
SMARCA1P28370 STK19B-204ENST00000512515 211 ntBASIC20.28■□□□□ 0.84
SMARCA1P28370 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.28■□□□□ 0.84
SMARCA1P28370 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.28■□□□□ 0.84
SMARCA1P28370 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.28■□□□□ 0.84
SMARCA1P28370 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.28■□□□□ 0.84
SMARCA1P28370 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SMARCA1P28370 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SMARCA1P28370 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMARCA1P28370 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.27■□□□□ 0.84
SMARCA1P28370 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SMARCA1P28370 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SMARCA1P28370 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.27■□□□□ 0.84
SMARCA1P28370 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.27■□□□□ 0.84
SMARCA1P28370 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.27■□□□□ 0.84
SMARCA1P28370 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.27■□□□□ 0.84
SMARCA1P28370 KLF4P1-201ENST00000412782 1185 ntBASIC20.27■□□□□ 0.84
SMARCA1P28370 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.27■□□□□ 0.84
SMARCA1P28370 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.27■□□□□ 0.84
SMARCA1P28370 AP002469.2-201ENST00000531724 424 ntBASIC20.27■□□□□ 0.84
SMARCA1P28370 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SMARCA1P28370 SART3-203ENST00000546611 1184 ntBASIC20.27■□□□□ 0.84
SMARCA1P28370 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms