Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SNX3O60493 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
SNX3O60493 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SNX3O60493 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 AC026185.1-201ENST00000445748 174 ntBASIC17.48■□□□□ 0.39
SNX3O60493 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
SNX3O60493 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC17.48■□□□□ 0.39
SNX3O60493 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.48■□□□□ 0.39
SNX3O60493 AC116407.2-201ENST00000613639 860 ntBASIC17.48■□□□□ 0.39
SNX3O60493 AC130371.2-201ENST00000619443 611 ntBASIC17.48■□□□□ 0.39
SNX3O60493 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.48■□□□□ 0.39
SNX3O60493 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 HYMAI-201ENST00000635591 3347 ntBASIC17.48■□□□□ 0.39
SNX3O60493 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
SNX3O60493 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
SNX3O60493 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
SNX3O60493 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SNX3O60493 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SNX3O60493 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.47■□□□□ 0.39
SNX3O60493 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
SNX3O60493 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
SNX3O60493 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SNX3O60493 LYSMD4-203ENST00000378904 2122 ntBASIC17.47■□□□□ 0.39
SNX3O60493 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.47■□□□□ 0.39
SNX3O60493 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 AC105917.1-201ENST00000506637 2539 ntBASIC17.47■□□□□ 0.39
SNX3O60493 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SNX3O60493 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.47■□□□□ 0.39
SNX3O60493 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.47■□□□□ 0.39
SNX3O60493 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.47■□□□□ 0.39
SNX3O60493 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.47■□□□□ 0.39
SNX3O60493 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
SNX3O60493 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SNX3O60493 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 AC079328.2-201ENST00000561241 3354 ntBASIC17.47■□□□□ 0.39
SNX3O60493 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SNX3O60493 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.47■□□□□ 0.39
SNX3O60493 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SNX3O60493 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.47■□□□□ 0.39
SNX3O60493 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SNX3O60493 KRT8P7-201ENST00000533003 1432 ntBASIC17.47■□□□□ 0.39
SNX3O60493 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNX3O60493 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNX3O60493 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNX3O60493 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNX3O60493 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.46■□□□□ 0.39
SNX3O60493 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNX3O60493 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.46■□□□□ 0.39
SNX3O60493 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNX3O60493 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.46■□□□□ 0.39
SNX3O60493 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.46■□□□□ 0.39
SNX3O60493 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SNX3O60493 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.46■□□□□ 0.39
SNX3O60493 RPS2P4-201ENST00000476944 856 ntBASIC17.46■□□□□ 0.39
SNX3O60493 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.46■□□□□ 0.39
SNX3O60493 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms