Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
NPHP1O15259 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
NPHP1O15259 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
NPHP1O15259 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC22.29■■□□□ 1.16
NPHP1O15259 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC22.29■■□□□ 1.16
NPHP1O15259 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC22.29■■□□□ 1.16
NPHP1O15259 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC22.29■■□□□ 1.16
NPHP1O15259 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC22.29■■□□□ 1.16
NPHP1O15259 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC22.29■■□□□ 1.16
NPHP1O15259 SNHG9-202ENST00000564014 471 ntBASIC22.29■■□□□ 1.16
NPHP1O15259 CYGB-205ENST00000590175 830 ntTSL 3 BASIC22.29■■□□□ 1.16
NPHP1O15259 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
NPHP1O15259 EML3-217ENST00000531557 2509 ntTSL 5 BASIC22.29■■□□□ 1.16
NPHP1O15259 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC22.29■■□□□ 1.16
NPHP1O15259 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 AC132938.6-201ENST00000623828 1655 ntBASIC22.29■■□□□ 1.16
NPHP1O15259 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
NPHP1O15259 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
NPHP1O15259 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
NPHP1O15259 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP1O15259 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
NPHP1O15259 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP1O15259 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC22.28■■□□□ 1.16
NPHP1O15259 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
NPHP1O15259 ESPNP-201ENST00000270691 2015 ntBASIC22.28■■□□□ 1.16
NPHP1O15259 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
NPHP1O15259 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP1O15259 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC22.28■■□□□ 1.16
NPHP1O15259 LBH-203ENST00000404397 543 ntTSL 4 BASIC22.28■■□□□ 1.16
NPHP1O15259 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC22.28■■□□□ 1.16
NPHP1O15259 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC22.28■■□□□ 1.16
NPHP1O15259 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC22.28■■□□□ 1.16
NPHP1O15259 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP1O15259 ETFA-208ENST00000559602 792 ntTSL 3 BASIC22.28■■□□□ 1.16
NPHP1O15259 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC22.28■■□□□ 1.16
NPHP1O15259 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC22.28■■□□□ 1.16
NPHP1O15259 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP1O15259 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC22.28■■□□□ 1.16
NPHP1O15259 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC22.28■■□□□ 1.16
NPHP1O15259 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP1O15259 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC22.28■■□□□ 1.16
NPHP1O15259 AC010460.3-201ENST00000511359 1579 ntBASIC22.28■■□□□ 1.16
NPHP1O15259 AC116562.4-201ENST00000641316 2276 ntBASIC22.28■■□□□ 1.16
NPHP1O15259 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC22.28■■□□□ 1.16
NPHP1O15259 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP1O15259 OR6D1P-202ENST00000641007 5290 ntBASIC22.28■■□□□ 1.16
NPHP1O15259 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP1O15259 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
NPHP1O15259 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC22.27■■□□□ 1.16
NPHP1O15259 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC22.27■■□□□ 1.16
NPHP1O15259 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.27■■□□□ 1.16
NPHP1O15259 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC22.27■■□□□ 1.16
NPHP1O15259 KRT18P27-201ENST00000427733 1299 ntBASIC22.27■■□□□ 1.16
NPHP1O15259 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 AC122714.2-201ENST00000502787 707 ntBASIC22.27■■□□□ 1.16
NPHP1O15259 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC22.27■■□□□ 1.16
NPHP1O15259 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC22.27■■□□□ 1.16
NPHP1O15259 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC22.27■■□□□ 1.16
NPHP1O15259 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
NPHP1O15259 MIR4751-201ENST00000578027 74 ntBASIC22.27■■□□□ 1.16
NPHP1O15259 TCAP-202ENST00000578283 583 ntTSL 5 BASIC22.27■■□□□ 1.16
NPHP1O15259 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC22.27■■□□□ 1.16
NPHP1O15259 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
NPHP1O15259 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
NPHP1O15259 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NPHP1O15259 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC22.27■■□□□ 1.16
NPHP1O15259 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
NPHP1O15259 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
NPHP1O15259 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.15
NPHP1O15259 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP1O15259 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms