Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.71■□□□□ 0.58
SMARCAL1Q9NZC9 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
SMARCAL1Q9NZC9 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 AL139384.1-201ENST00000612143 3047 ntBASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 SEC1P-202ENST00000473944 940 ntBASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 FITM1-202ENST00000559294 800 ntBASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 AC009065.1-201ENST00000564055 1225 ntBASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 FLJ38576-201ENST00000623820 2459 ntBASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMARCAL1Q9NZC9 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 INGX-201ENST00000359239 846 ntBASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 MIR3180-4-201ENST00000582223 153 ntBASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 AC024243.1-201ENST00000609234 778 ntBASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.69■□□□□ 0.58
SMARCAL1Q9NZC9 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms