Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SCN4AP35499 ANO7L1-203ENST00000602586 1720 ntBASIC20.81■□□□□ 0.92
SCN4AP35499 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN4AP35499 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SCN4AP35499 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.81■□□□□ 0.92
SCN4AP35499 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SCN4AP35499 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.81■□□□□ 0.92
SCN4AP35499 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SCN4AP35499 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
SCN4AP35499 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.81■□□□□ 0.92
SCN4AP35499 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 PI4KAP1-204ENST00000612579 1703 ntBASIC20.8■□□□□ 0.92
SCN4AP35499 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN4AP35499 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.8■□□□□ 0.92
SCN4AP35499 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN4AP35499 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.8■□□□□ 0.92
SCN4AP35499 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN4AP35499 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SCN4AP35499 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 COQ9-214ENST00000567933 882 ntTSL 3 BASIC20.8■□□□□ 0.92
SCN4AP35499 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
SCN4AP35499 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN4AP35499 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
SCN4AP35499 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.8■□□□□ 0.92
SCN4AP35499 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SCN4AP35499 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SCN4AP35499 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
SCN4AP35499 BX276092.7-203ENST00000637198 1536 ntBASIC20.79■□□□□ 0.92
SCN4AP35499 AC129492.6-201ENST00000611383 1305 ntBASIC20.79■□□□□ 0.92
SCN4AP35499 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN4AP35499 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 SPDYE7P-202ENST00000420373 878 ntBASIC20.79■□□□□ 0.92
SCN4AP35499 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 SPDYE14P-201ENST00000442619 822 ntBASIC20.79■□□□□ 0.92
SCN4AP35499 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SCN4AP35499 IGHV3-42-201ENST00000520410 361 ntBASIC20.79■□□□□ 0.92
SCN4AP35499 AL596325.1-201ENST00000563991 1082 ntBASIC20.79■□□□□ 0.92
SCN4AP35499 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.79■□□□□ 0.92
SCN4AP35499 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SCN4AP35499 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN4AP35499 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC20.79■□□□□ 0.92
SCN4AP35499 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN4AP35499 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.79■□□□□ 0.92
SCN4AP35499 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SCN4AP35499 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SCN4AP35499 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.78■□□□□ 0.92
SCN4AP35499 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 AC008677.1-201ENST00000519230 1561 ntBASIC20.78■□□□□ 0.92
SCN4AP35499 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC20.78■□□□□ 0.92
SCN4AP35499 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC20.78■□□□□ 0.92
SCN4AP35499 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.78■□□□□ 0.92
SCN4AP35499 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC20.78■□□□□ 0.92
SCN4AP35499 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SCN4AP35499 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC20.78■□□□□ 0.92
SCN4AP35499 RBPMS2P1-201ENST00000437762 623 ntBASIC20.78■□□□□ 0.92
SCN4AP35499 ATP5G2P4-201ENST00000442175 420 ntBASIC20.78■□□□□ 0.92
SCN4AP35499 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC20.78■□□□□ 0.92
SCN4AP35499 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.78■□□□□ 0.92
SCN4AP35499 INO80E-210ENST00000567705 880 ntTSL 3 BASIC20.78■□□□□ 0.92
SCN4AP35499 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC20.78■□□□□ 0.92
SCN4AP35499 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC20.78■□□□□ 0.92
SCN4AP35499 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SCN4AP35499 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SCN4AP35499 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SCN4AP35499 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN4AP35499 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN4AP35499 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN4AP35499 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.77■□□□□ 0.92
SCN4AP35499 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SCN4AP35499 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.77■□□□□ 0.92
SCN4AP35499 FAM185BP-201ENST00000443595 716 ntBASIC20.77■□□□□ 0.92
SCN4AP35499 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms