Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 AC112698.1-201ENST00000510299 916 ntBASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TM9SF3Q9HD45 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 AL356309.3-201ENST00000624132 1934 ntBASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 RPS2P1-201ENST00000434010 821 ntBASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.77■□□□□ 0.44
TM9SF3Q9HD45 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TM9SF3Q9HD45 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.77■□□□□ 0.43
TM9SF3Q9HD45 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
TM9SF3Q9HD45 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TM9SF3Q9HD45 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.77■□□□□ 0.43
TM9SF3Q9HD45 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TM9SF3Q9HD45 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
TM9SF3Q9HD45 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 PCDHB18P-201ENST00000524813 2368 ntBASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TM9SF3Q9HD45 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 ANO7L1-203ENST00000602586 1720 ntBASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.75■□□□□ 0.43
TM9SF3Q9HD45 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms