Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
C9orf40Q8IXQ3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.41■□□□□ 0.22
C9orf40Q8IXQ3 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
C9orf40Q8IXQ3 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
C9orf40Q8IXQ3 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
C9orf40Q8IXQ3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
C9orf40Q8IXQ3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
C9orf40Q8IXQ3 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
C9orf40Q8IXQ3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 SIRPAP1-201ENST00000448467 1770 ntBASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 AKR1C7P-201ENST00000305623 895 ntBASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 AC132008.2-207ENST00000454517 770 ntBASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
C9orf40Q8IXQ3 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
C9orf40Q8IXQ3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms