Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 STX7-201ENST00000367937 1090 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 TERF1P5-201ENST00000477545 1207 ntBASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 BRI3-207ENST00000539286 699 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 TFG-210ENST00000620299 1289 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 AC010536.3-201ENST00000620306 533 ntBASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 AC006116.8-202ENST00000587620 1550 ntBASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 HLA-G-202ENST00000376815 851 ntBASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 HLA-G-203ENST00000376818 1127 ntBASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 AL591742.1-201ENST00000604433 565 ntBASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28AQ8IWP9 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 AC026271.2-201ENST00000428091 497 ntBASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 AC013268.1-206ENST00000638368 961 ntBASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 AC112229.1-201ENST00000639295 961 ntBASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28AQ8IWP9 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms