Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.47■□□□□ 0.23
RNF4P78317 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
RNF4P78317 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.47■□□□□ 0.23
RNF4P78317 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.47■□□□□ 0.23
RNF4P78317 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.47■□□□□ 0.23
RNF4P78317 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.47■□□□□ 0.23
RNF4P78317 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.47■□□□□ 0.23
RNF4P78317 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
RNF4P78317 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
RNF4P78317 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.47■□□□□ 0.23
RNF4P78317 AL691432.3-201ENST00000621860 400 ntBASIC16.47■□□□□ 0.23
RNF4P78317 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
RNF4P78317 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
RNF4P78317 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF4P78317 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF4P78317 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
RNF4P78317 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
RNF4P78317 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
RNF4P78317 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF4P78317 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.46■□□□□ 0.23
RNF4P78317 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RNF4P78317 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.46■□□□□ 0.23
RNF4P78317 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF4P78317 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.23
RNF4P78317 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
RNF4P78317 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
RNF4P78317 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF4P78317 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 FAM220CP-201ENST00000395253 831 ntBASIC16.46■□□□□ 0.23
RNF4P78317 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF4P78317 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF4P78317 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF4P78317 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF4P78317 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF4P78317 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF4P78317 AC009949.1-201ENST00000623048 1830 ntBASIC16.46■□□□□ 0.23
RNF4P78317 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF4P78317 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
RNF4P78317 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF4P78317 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNF4P78317 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
RNF4P78317 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.46■□□□□ 0.22
RNF4P78317 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNF4P78317 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RNF4P78317 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
RNF4P78317 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF4P78317 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF4P78317 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.45■□□□□ 0.22
RNF4P78317 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.45■□□□□ 0.22
RNF4P78317 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF4P78317 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.45■□□□□ 0.22
RNF4P78317 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
RNF4P78317 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF4P78317 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF4P78317 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF4P78317 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF4P78317 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
RNF4P78317 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms