Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.54■□□□□ 0.4
SRP54P61011 AP001005.1-201ENST00000571755 1248 ntBASIC17.54■□□□□ 0.4
SRP54P61011 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SRP54P61011 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SRP54P61011 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.54■□□□□ 0.4
SRP54P61011 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SRP54P61011 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SRP54P61011 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.53■□□□□ 0.4
SRP54P61011 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
SRP54P61011 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SRP54P61011 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SRP54P61011 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.53■□□□□ 0.4
SRP54P61011 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 AC093677.2-201ENST00000600169 1863 ntBASIC17.53■□□□□ 0.4
SRP54P61011 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SRP54P61011 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.53■□□□□ 0.4
SRP54P61011 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.53■□□□□ 0.4
SRP54P61011 AC096633.1-201ENST00000422446 749 ntBASIC17.53■□□□□ 0.4
SRP54P61011 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SRP54P61011 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.53■□□□□ 0.4
SRP54P61011 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.53■□□□□ 0.4
SRP54P61011 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.53■□□□□ 0.4
SRP54P61011 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.53■□□□□ 0.4
SRP54P61011 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.53■□□□□ 0.4
SRP54P61011 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SRP54P61011 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.53■□□□□ 0.4
SRP54P61011 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SRP54P61011 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.53■□□□□ 0.4
SRP54P61011 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 KRT8P47-201ENST00000604727 1398 ntBASIC17.53■□□□□ 0.4
SRP54P61011 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SRP54P61011 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 NEFHP1-201ENST00000412845 2629 ntBASIC17.52■□□□□ 0.4
SRP54P61011 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SRP54P61011 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.52■□□□□ 0.4
SRP54P61011 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SRP54P61011 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.52■□□□□ 0.4
SRP54P61011 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 AL022342.1-201ENST00000400363 863 ntBASIC17.52■□□□□ 0.4
SRP54P61011 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.52■□□□□ 0.4
SRP54P61011 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.52■□□□□ 0.4
SRP54P61011 RNPS1P1-201ENST00000507437 918 ntBASIC17.52■□□□□ 0.4
SRP54P61011 AC073648.2-201ENST00000510116 352 ntBASIC17.52■□□□□ 0.4
SRP54P61011 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.52■□□□□ 0.4
SRP54P61011 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.52■□□□□ 0.4
SRP54P61011 AC148477.8-201ENST00000624298 468 ntBASIC17.52■□□□□ 0.4
SRP54P61011 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SRP54P61011 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
SRP54P61011 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SRP54P61011 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.52■□□□□ 0.39
SRP54P61011 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms