Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.23■□□□□ 0.35
FOXA1P55317 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.23■□□□□ 0.35
FOXA1P55317 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.23■□□□□ 0.35
FOXA1P55317 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
FOXA1P55317 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.23■□□□□ 0.35
FOXA1P55317 LINC01451-201ENST00000623792 534 ntBASIC17.23■□□□□ 0.35
FOXA1P55317 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
FOXA1P55317 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.23■□□□□ 0.35
FOXA1P55317 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
FOXA1P55317 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.22■□□□□ 0.35
FOXA1P55317 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.22■□□□□ 0.35
FOXA1P55317 NKILA-202ENST00000614771 2598 ntBASIC17.22■□□□□ 0.35
FOXA1P55317 AC011676.5-201ENST00000624864 2660 ntBASIC17.22■□□□□ 0.35
FOXA1P55317 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
FOXA1P55317 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
FOXA1P55317 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
FOXA1P55317 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.22■□□□□ 0.35
FOXA1P55317 HLA-F-220ENST00000434407 884 ntBASIC17.22■□□□□ 0.35
FOXA1P55317 DDX43P3-201ENST00000441064 443 ntBASIC17.22■□□□□ 0.35
FOXA1P55317 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
FOXA1P55317 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
FOXA1P55317 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.22■□□□□ 0.35
FOXA1P55317 AC140113.3-201ENST00000605663 199 ntBASIC17.22■□□□□ 0.35
FOXA1P55317 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.22■□□□□ 0.35
FOXA1P55317 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
FOXA1P55317 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
FOXA1P55317 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
FOXA1P55317 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
FOXA1P55317 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXA1P55317 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
FOXA1P55317 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
FOXA1P55317 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXA1P55317 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
FOXA1P55317 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXA1P55317 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.21■□□□□ 0.35
FOXA1P55317 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 AC092597.1-201ENST00000487352 616 ntBASIC17.21■□□□□ 0.35
FOXA1P55317 COX11P1-201ENST00000489116 835 ntBASIC17.21■□□□□ 0.35
FOXA1P55317 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.21■□□□□ 0.35
FOXA1P55317 AC011558.1-201ENST00000623459 338 ntBASIC17.21■□□□□ 0.35
FOXA1P55317 AC066615.1-201ENST00000640911 628 ntBASIC17.21■□□□□ 0.35
FOXA1P55317 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
FOXA1P55317 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
FOXA1P55317 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
FOXA1P55317 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
FOXA1P55317 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
FOXA1P55317 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.21■□□□□ 0.34
FOXA1P55317 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
FOXA1P55317 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
FOXA1P55317 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.21■□□□□ 0.34
FOXA1P55317 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
FOXA1P55317 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
FOXA1P55317 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.2■□□□□ 0.34
FOXA1P55317 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 BCL2-203ENST00000589955 5011 ntBASIC17.2■□□□□ 0.34
FOXA1P55317 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
FOXA1P55317 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.2■□□□□ 0.34
FOXA1P55317 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.2■□□□□ 0.34
FOXA1P55317 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.2■□□□□ 0.34
FOXA1P55317 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.2■□□□□ 0.34
FOXA1P55317 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
FOXA1P55317 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms