Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.745e-8■■■□□ 16.9
RPS3P23396 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.33■□□□□ 0.685e-8■■■□□ 16.9
RPS3P23396 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.55e-8■■■□□ 16.9
RPS3P23396 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.65■□□□□ 0.425e-8■■■□□ 16.9
RPS3P23396 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.415e-8■■■□□ 16.9
RPS3P23396 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.79■□□□□ 0.285e-8■■■□□ 16.9
RPS3P23396 EEF1D-224ENST00000529007 861 ntTSL 216.79■□□□□ 0.285e-8■■■□□ 16.9
RPS3P23396 EEF1D-250ENST00000533833 831 ntTSL 516.45■□□□□ 0.225e-8■■■□□ 16.9
RPS3P23396 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.25e-8■■■□□ 16.9
RPS3P23396 EEF1D-227ENST00000529576 424 ntTSL 215.87■□□□□ 0.135e-9■■■□□ 16.9
RPS3P23396 EEF1D-229ENST00000530109 533 ntTSL 215.6■□□□□ 0.095e-8■■■□□ 16.9
RPS3P23396 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.015e-8■■■□□ 16.9
RPS3P23396 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.195e-8■■■□□ 16.9
RPS3P23396 EEF1D-219ENST00000527741 3718 ntTSL 210.99□□□□□ -0.655e-8■■■□□ 16.9
RPS3P23396 AC011481.3-201ENST00000623895 5594 ntBASIC12.92□□□□□ -0.343e-14■■■□□ 16.9
RPS3P23396 TMEM214-205ENST00000434544 834 ntTSL 216.68■□□□□ 0.266e-9■■■□□ 16.9
RPS3P23396 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.581e-6■■■□□ 16.9
RPS3P23396 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.341e-6■■■□□ 16.9
RPS3P23396 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.211e-6■■■□□ 16.9
RPS3P23396 SDCBP-212ENST00000523483 3589 ntTSL 2 BASIC9.18□□□□□ -0.941e-6■■■□□ 16.9
RPS3P23396 SDCBP-206ENST00000519115 812 ntTSL 27.48□□□□□ -1.211e-6■■■□□ 16.9
RPS3P23396 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.511e-6■■■□□ 16.9
RPS3P23396 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.49□□□□□ -1.691e-6■■■□□ 16.9
RPS3P23396 RPS17-210ENST00000561440 1922 ntTSL 216.77■□□□□ 0.284e-10■■■□□ 16.9
RPS3P23396 PARP1-207ENST00000490921 3165 ntTSL 28.72□□□□□ -1.012e-7■■■□□ 16.9
RPS3P23396 RPS17-206ENST00000560612 1877 ntTSL 27.82□□□□□ -1.164e-10■■■□□ 16.9
RPS3P23396 RPS17-208ENST00000561068 522 ntTSL 34.62□□□□□ -1.674e-10■■■□□ 16.9
RPS3P23396 PIN1-211ENST00000592184 517 ntTSL 222.6■■□□□ 1.213e-6■■■□□ 16.9
RPS3P23396 CHMP2A-204ENST00000597848 509 ntTSL 321.75■■□□□ 1.073e-6■■■□□ 16.9
RPS3P23396 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.593e-6■■■□□ 16.9
RPS3P23396 POLD4-203ENST00000528087 1701 ntTSL 217.78■□□□□ 0.443e-7■■■□□ 16.9
RPS3P23396 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.62■□□□□ 0.413e-7■■■□□ 16.9
RPS3P23396 CHMP2A-203ENST00000597209 662 ntTSL 217.34■□□□□ 0.373e-6■■■□□ 16.9
RPS3P23396 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.353e-6■■■□□ 16.9
RPS3P23396 CNOT8-213ENST00000520472 912 ntTSL 517.08■□□□□ 0.323e-6■■■□□ 16.9
RPS3P23396 POLD4-210ENST00000534515 1793 ntTSL 216.77■□□□□ 0.283e-7■■■□□ 16.9
RPS3P23396 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.59■□□□□ 0.253e-7■■■□□ 16.9
RPS3P23396 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.43■□□□□ 0.223e-6■■■□□ 16.9
RPS3P23396 OTUB1-204ENST00000447683 2315 ntTSL 216.1■□□□□ 0.173e-7■■■□□ 16.9
RPS3P23396 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.08■□□□□ 0.163e-6■■■□□ 16.9
RPS3P23396 CNOT8-221ENST00000522458 623 ntTSL 415.82■□□□□ 0.123e-6■■■□□ 16.9
RPS3P23396 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.75■□□□□ 0.113e-6■■■□□ 16.9
RPS3P23396 CNOT8-208ENST00000519211 620 ntTSL 315.71■□□□□ 0.113e-6■■■□□ 16.9
RPS3P23396 POLD4-212ENST00000542982 809 ntTSL 1 (best)15.69■□□□□ 0.13e-7■■■□□ 16.9
RPS3P23396 POLD4-204ENST00000529000 543 ntTSL 515.42■□□□□ 0.063e-7■■■□□ 16.9
RPS3P23396 PIN1-203ENST00000585442 705 ntTSL 515.34■□□□□ 0.053e-6■■■□□ 16.9
RPS3P23396 PIN1-205ENST00000586352 755 ntTSL 315.33■□□□□ 0.043e-6■■■□□ 16.9
RPS3P23396 POLR1C-207ENST00000481352 1725 ntTSL 515.17■□□□□ 0.023e-6■■■□□ 16.9
RPS3P23396 PIN1-204ENST00000586025 4022 ntTSL 215.16■□□□□ 0.023e-6■■■□□ 16.9
RPS3P23396 CNOT8-203ENST00000517568 692 ntTSL 415.11■□□□□ 0.013e-6■■■□□ 16.9
RPS3P23396 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.06■□□□□ 03e-7■■■□□ 16.9
RPS3P23396 MPZL1-210ENST00000487858 420 ntTSL 414.83□□□□□ -0.042e-7■■■□□ 16.9
RPS3P23396 POLD4-202ENST00000524743 558 ntTSL 414.08□□□□□ -0.163e-7■■■□□ 16.9
RPS3P23396 DCP2-205ENST00000510046 369 ntTSL 213.99□□□□□ -0.173e-6■■■□□ 16.9
RPS3P23396 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.193e-7■■■□□ 16.9
RPS3P23396 PIN1-208ENST00000589058 536 ntTSL 313.85□□□□□ -0.193e-6■■■□□ 16.9
RPS3P23396 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.193e-6■■■□□ 16.9
RPS3P23396 CNOT8-222ENST00000522644 1027 ntTSL 513.79□□□□□ -0.23e-6■■■□□ 16.9
RPS3P23396 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.213e-6■■■□□ 16.9
RPS3P23396 POLD4-208ENST00000532830 904 ntTSL 3 BASIC13.63□□□□□ -0.233e-7■■■□□ 16.9
RPS3P23396 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.233e-7■■■□□ 16.9
RPS3P23396 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC13.63□□□□□ -0.233e-7■■■□□ 16.9
RPS3P23396 CNOT8-212ENST00000519903 648 ntTSL 413.1□□□□□ -0.313e-6■■■□□ 16.9
RPS3P23396 POLR1C-206ENST00000455605 1882 ntTSL 512.68□□□□□ -0.383e-6■■■□□ 16.9
RPS3P23396 MTHFD1-209ENST00000554768 563 ntTSL 412.61□□□□□ -0.393e-6■■■□□ 16.9
RPS3P23396 MTHFD1-208ENST00000554739 688 ntTSL 312.61□□□□□ -0.393e-6■■■□□ 16.9
RPS3P23396 POLR1C-204ENST00000423780 418 ntTSL 512.56□□□□□ -0.43e-6■■■□□ 16.9
RPS3P23396 CHMP2A-201ENST00000312547 913 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.413e-6■■■□□ 16.9
RPS3P23396 CHMP2A-206ENST00000600118 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.413e-6■■■□□ 16.9
RPS3P23396 NAMPT-209ENST00000484527 833 ntTSL 312.42□□□□□ -0.423e-6■■■□□ 16.9
RPS3P23396 CCND2-202ENST00000536537 529 ntTSL 512.25□□□□□ -0.453e-6■■■□□ 16.9
RPS3P23396 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.493e-6■■■□□ 16.9
RPS3P23396 PIN1-209ENST00000590540 702 ntTSL 311.95□□□□□ -0.53e-6■■■□□ 16.9
RPS3P23396 MTHFD1-211ENST00000555709 803 ntTSL 211.56□□□□□ -0.562e-7■■■□□ 16.9
RPS3P23396 POLR1C-202ENST00000372344 1119 ntTSL 5 BASIC11.55□□□□□ -0.563e-6■■■□□ 16.9
RPS3P23396 CHMP2A-207ENST00000600804 592 ntTSL 211.51□□□□□ -0.573e-6■■■□□ 16.9
RPS3P23396 MTHFD1-210ENST00000555252 2053 ntTSL 1 (best)10.38□□□□□ -0.752e-6■■■□□ 16.9
RPS3P23396 CHMP2A-202ENST00000596708 687 ntTSL 310.06□□□□□ -0.83e-6■■■□□ 16.9
RPS3P23396 OTUB1-207ENST00000536443 553 ntTSL 39.63□□□□□ -0.873e-7■■■□□ 16.9
RPS3P23396 CCND2-203ENST00000536795 572 ntTSL 39.01□□□□□ -0.973e-6■■■□□ 16.9
RPS3P23396 MTHFD1-201ENST00000216605 3136 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.022e-6■■■□□ 16.9
RPS3P23396 MTHFD1-202ENST00000545908 6814 ntTSL 2 BASIC8.67□□□□□ -1.022e-6■■■□□ 16.9
RPS3P23396 CCND2-204ENST00000541542 322 ntTSL 37.51□□□□□ -1.213e-6■■■□□ 16.9
RPS3P23396 ZNF121-201ENST00000320451 1563 ntAPPRIS P1 TSL 3 BASIC7.45□□□□□ -1.223e-6■■■□□ 16.9
RPS3P23396 HYOU1-204ENST00000527738 809 ntTSL 27.44□□□□□ -1.223e-14■■■□□ 16.9
RPS3P23396 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC7.4□□□□□ -1.233e-6■■■□□ 16.9
RPS3P23396 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.313e-6■■■□□ 16.9
RPS3P23396 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.383e-6■■■□□ 16.9
RPS3P23396 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.393e-6■■■□□ 16.9
RPS3P23396 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.453e-6■■■□□ 16.9
RPS3P23396 SKIV2L2-203ENST00000503165 571 ntTSL 55.65□□□□□ -1.53e-6■■■□□ 16.9
RPS3P23396 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.523e-6■■■□□ 16.9
RPS3P23396 POLR1C-208ENST00000488601 973 ntTSL 24.63□□□□□ -1.673e-6■■■□□ 16.9
RPS3P23396 CNOT8-220ENST00000522139 566 ntTSL 34.51□□□□□ -1.693e-6■■■□□ 16.9
RPS3P23396 PDCD6IP-207ENST00000459659 662 ntTSL 33.6□□□□□ -1.832e-11■■■□□ 16.9
RPS3P23396 ACSL3-208ENST00000495541 749 ntTSL 22.49□□□□□ -2.011e-7■■■□□ 16.9
RPS3P23396 MCTS1-204ENST00000484481 398 ntTSL 21.87□□□□□ -2.113e-6■■■□□ 16.9
RPS3P23396 POLR1C-205ENST00000428025 576 ntTSL 41.66□□□□□ -2.143e-6■■■□□ 16.9
RPS3P23396 NAMPT-210ENST00000486949 1115 ntTSL 20.81□□□□□ -2.283e-6■■■□□ 16.9
RPS3P23396 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.662e-7■■■□□ 16.9
Retrieved 100 of 24,271 protein–RNA pairs in 293.6 ms