Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHA3Q9Y5H8 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
PCDHA3Q9Y5H8 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHA3Q9Y5H8 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHA3Q9Y5H8 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHA3Q9Y5H8 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC25.67■■□□□ 1.7
PCDHA3Q9Y5H8 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHA3Q9Y5H8 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PCDHA3Q9Y5H8 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.66■■□□□ 1.7
PCDHA3Q9Y5H8 AC008813.1-201ENST00000536597 885 ntBASIC25.66■■□□□ 1.7
PCDHA3Q9Y5H8 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHA3Q9Y5H8 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC25.66■■□□□ 1.7
PCDHA3Q9Y5H8 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.66■■□□□ 1.7
PCDHA3Q9Y5H8 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA3Q9Y5H8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA3Q9Y5H8 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.65■■□□□ 1.7
PCDHA3Q9Y5H8 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.65■■□□□ 1.7
PCDHA3Q9Y5H8 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.65■■□□□ 1.7
PCDHA3Q9Y5H8 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
PCDHA3Q9Y5H8 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA3Q9Y5H8 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
PCDHA3Q9Y5H8 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
PCDHA3Q9Y5H8 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
PCDHA3Q9Y5H8 DUX4L11-201ENST00000611504 1267 ntBASIC25.63■■□□□ 1.69
PCDHA3Q9Y5H8 DUX4L12-201ENST00000614593 1267 ntBASIC25.63■■□□□ 1.69
PCDHA3Q9Y5H8 DUX4L14-201ENST00000621227 1267 ntBASIC25.63■■□□□ 1.69
PCDHA3Q9Y5H8 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA3Q9Y5H8 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PCDHA3Q9Y5H8 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
PCDHA3Q9Y5H8 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA3Q9Y5H8 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA3Q9Y5H8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.62■■□□□ 1.69
PCDHA3Q9Y5H8 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.62■■□□□ 1.69
PCDHA3Q9Y5H8 AC148477.6-201ENST00000623746 465 ntBASIC25.62■■□□□ 1.69
PCDHA3Q9Y5H8 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA3Q9Y5H8 MIR219A2-201ENST00000608502 1504 ntBASIC25.62■■□□□ 1.69
PCDHA3Q9Y5H8 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHA3Q9Y5H8 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA3Q9Y5H8 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA3Q9Y5H8 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA3Q9Y5H8 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA3Q9Y5H8 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA3Q9Y5H8 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PCDHA3Q9Y5H8 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC25.6■■□□□ 1.69
PCDHA3Q9Y5H8 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDHA3Q9Y5H8 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.6■■□□□ 1.69
PCDHA3Q9Y5H8 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
PCDHA3Q9Y5H8 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC25.59■■□□□ 1.69
PCDHA3Q9Y5H8 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA3Q9Y5H8 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA3Q9Y5H8 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA3Q9Y5H8 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
PCDHA3Q9Y5H8 ERN1-208ENST00000606895 2068 ntBASIC25.59■■□□□ 1.69
PCDHA3Q9Y5H8 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PCDHA3Q9Y5H8 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
PCDHA3Q9Y5H8 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
PCDHA3Q9Y5H8 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
PCDHA3Q9Y5H8 AC010501.1-201ENST00000606270 1962 ntBASIC25.58■■□□□ 1.69
PCDHA3Q9Y5H8 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
PCDHA3Q9Y5H8 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC25.58■■□□□ 1.68
PCDHA3Q9Y5H8 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
PCDHA3Q9Y5H8 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
PCDHA3Q9Y5H8 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
PCDHA3Q9Y5H8 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
PCDHA3Q9Y5H8 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
PCDHA3Q9Y5H8 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA3Q9Y5H8 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA3Q9Y5H8 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC25.56■■□□□ 1.68
PCDHA3Q9Y5H8 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA3Q9Y5H8 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.56■■□□□ 1.68
PCDHA3Q9Y5H8 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHA3Q9Y5H8 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC25.56■■□□□ 1.68
PCDHA3Q9Y5H8 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA3Q9Y5H8 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA3Q9Y5H8 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA3Q9Y5H8 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA3Q9Y5H8 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PCDHA3Q9Y5H8 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
PCDHA3Q9Y5H8 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.55■■□□□ 1.68
PCDHA3Q9Y5H8 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHA3Q9Y5H8 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHA3Q9Y5H8 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHA3Q9Y5H8 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC25.54■■□□□ 1.68
PCDHA3Q9Y5H8 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
PCDHA3Q9Y5H8 CHST11-203ENST00000547956 936 ntTSL 2 BASIC25.54■■□□□ 1.68
PCDHA3Q9Y5H8 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHA3Q9Y5H8 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA3Q9Y5H8 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA3Q9Y5H8 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.53■■□□□ 1.68
PCDHA3Q9Y5H8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.53■■□□□ 1.68
PCDHA3Q9Y5H8 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC25.53■■□□□ 1.68
PCDHA3Q9Y5H8 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHA3Q9Y5H8 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHA3Q9Y5H8 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHA3Q9Y5H8 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHA3Q9Y5H8 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC25.52■■□□□ 1.68
PCDHA3Q9Y5H8 HLA-V-202ENST00000446817 847 ntBASIC25.52■■□□□ 1.68
PCDHA3Q9Y5H8 ZNRF2P2-203ENST00000454624 420 ntBASIC25.52■■□□□ 1.68
PCDHA3Q9Y5H8 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC25.52■■□□□ 1.68
PCDHA3Q9Y5H8 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms