Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC31.62■■■□□ 2.65
SMC4Q9NTJ3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
SMC4Q9NTJ3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC31.61■■■□□ 2.65
SMC4Q9NTJ3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
SMC4Q9NTJ3 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SMC4Q9NTJ3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SMC4Q9NTJ3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SMC4Q9NTJ3 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SMC4Q9NTJ3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SMC4Q9NTJ3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.59■■■□□ 2.65
SMC4Q9NTJ3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC31.59■■■□□ 2.65
SMC4Q9NTJ3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.59■■■□□ 2.65
SMC4Q9NTJ3 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC31.58■■■□□ 2.65
SMC4Q9NTJ3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.58■■■□□ 2.65
SMC4Q9NTJ3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
SMC4Q9NTJ3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC31.57■■■□□ 2.64
SMC4Q9NTJ3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
SMC4Q9NTJ3 AL359504.2-201ENST00000605506 1601 ntBASIC31.57■■■□□ 2.64
SMC4Q9NTJ3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SMC4Q9NTJ3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
SMC4Q9NTJ3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC31.56■■■□□ 2.64
SMC4Q9NTJ3 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.56■■■□□ 2.64
SMC4Q9NTJ3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SMC4Q9NTJ3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
SMC4Q9NTJ3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
SMC4Q9NTJ3 AL157400.5-201ENST00000507624 621 ntBASIC31.55■■■□□ 2.64
SMC4Q9NTJ3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
SMC4Q9NTJ3 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC31.55■■■□□ 2.64
SMC4Q9NTJ3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
SMC4Q9NTJ3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SMC4Q9NTJ3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SMC4Q9NTJ3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC31.54■■■□□ 2.64
SMC4Q9NTJ3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SMC4Q9NTJ3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SMC4Q9NTJ3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SMC4Q9NTJ3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
SMC4Q9NTJ3 CEP120-209ENST00000515110 606 ntTSL 3 BASIC31.53■■■□□ 2.64
SMC4Q9NTJ3 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC31.53■■■□□ 2.64
SMC4Q9NTJ3 AC022413.1-201ENST00000624602 984 ntBASIC31.53■■■□□ 2.64
SMC4Q9NTJ3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC31.53■■■□□ 2.64
SMC4Q9NTJ3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
SMC4Q9NTJ3 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SMC4Q9NTJ3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
SMC4Q9NTJ3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SMC4Q9NTJ3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
SMC4Q9NTJ3 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
SMC4Q9NTJ3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
SMC4Q9NTJ3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
SMC4Q9NTJ3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.51■■■□□ 2.63
SMC4Q9NTJ3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC31.5■■■□□ 2.63
SMC4Q9NTJ3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC31.5■■■□□ 2.63
SMC4Q9NTJ3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC31.49■■■□□ 2.63
SMC4Q9NTJ3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.49■■■□□ 2.63
SMC4Q9NTJ3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
SMC4Q9NTJ3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
SMC4Q9NTJ3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
SMC4Q9NTJ3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
SMC4Q9NTJ3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
SMC4Q9NTJ3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SMC4Q9NTJ3 AC092296.2-201ENST00000589470 999 ntBASIC31.47■■■□□ 2.63
SMC4Q9NTJ3 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
SMC4Q9NTJ3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC31.47■■■□□ 2.63
SMC4Q9NTJ3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.46■■■□□ 2.63
SMC4Q9NTJ3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.46■■■□□ 2.63
SMC4Q9NTJ3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SMC4Q9NTJ3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC31.45■■■□□ 2.63
SMC4Q9NTJ3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SMC4Q9NTJ3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
SMC4Q9NTJ3 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
SMC4Q9NTJ3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SMC4Q9NTJ3 GPX1-201ENST00000419349 1106 ntBASIC31.44■■■□□ 2.62
SMC4Q9NTJ3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SMC4Q9NTJ3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC31.44■■■□□ 2.62
SMC4Q9NTJ3 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC31.44■■■□□ 2.62
SMC4Q9NTJ3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
SMC4Q9NTJ3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
SMC4Q9NTJ3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
SMC4Q9NTJ3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
SMC4Q9NTJ3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC31.43■■■□□ 2.62
SMC4Q9NTJ3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SMC4Q9NTJ3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
SMC4Q9NTJ3 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.42■■■□□ 2.62
SMC4Q9NTJ3 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SMC4Q9NTJ3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.41■■■□□ 2.62
SMC4Q9NTJ3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.41■■■□□ 2.62
SMC4Q9NTJ3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC31.4■■■□□ 2.62
SMC4Q9NTJ3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC31.4■■■□□ 2.62
SMC4Q9NTJ3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SMC4Q9NTJ3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SMC4Q9NTJ3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SMC4Q9NTJ3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SMC4Q9NTJ3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SMC4Q9NTJ3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SMC4Q9NTJ3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
SMC4Q9NTJ3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
SMC4Q9NTJ3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC31.38■■■□□ 2.61
SMC4Q9NTJ3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
SMC4Q9NTJ3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SMC4Q9NTJ3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC31.37■■■□□ 2.61
SMC4Q9NTJ3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms