Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIME1Q9H400 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIME1Q9H400 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.56■■□□□ 1.04
LIME1Q9H400 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.56■■□□□ 1.04
LIME1Q9H400 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.55■■□□□ 1.04
LIME1Q9H400 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIME1Q9H400 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIME1Q9H400 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
LIME1Q9H400 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIME1Q9H400 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
LIME1Q9H400 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIME1Q9H400 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.55■■□□□ 1.04
LIME1Q9H400 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIME1Q9H400 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
LIME1Q9H400 SMPD5-203ENST00000639008 1464 ntBASIC21.54■■□□□ 1.04
LIME1Q9H400 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
LIME1Q9H400 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.54■■□□□ 1.04
LIME1Q9H400 KRT8P33-201ENST00000508125 1423 ntBASIC21.54■■□□□ 1.04
LIME1Q9H400 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LIME1Q9H400 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIME1Q9H400 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
LIME1Q9H400 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIME1Q9H400 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIME1Q9H400 AC026202.3-201ENST00000600805 1127 ntBASIC21.53■■□□□ 1.04
LIME1Q9H400 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.53■■□□□ 1.04
LIME1Q9H400 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LIME1Q9H400 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIME1Q9H400 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIME1Q9H400 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LIME1Q9H400 AC010980.1-201ENST00000587192 1142 ntBASIC21.52■■□□□ 1.04
LIME1Q9H400 BHLHE23-202ENST00000612929 1109 ntBASIC21.52■■□□□ 1.04
LIME1Q9H400 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIME1Q9H400 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIME1Q9H400 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.03
LIME1Q9H400 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIME1Q9H400 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.51■■□□□ 1.03
LIME1Q9H400 DUX4L9-201ENST00000449051 1259 ntBASIC21.51■■□□□ 1.03
LIME1Q9H400 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIME1Q9H400 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIME1Q9H400 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIME1Q9H400 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.5■■□□□ 1.03
LIME1Q9H400 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.5■■□□□ 1.03
LIME1Q9H400 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.5■■□□□ 1.03
LIME1Q9H400 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIME1Q9H400 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
LIME1Q9H400 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
LIME1Q9H400 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LIME1Q9H400 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LIME1Q9H400 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LIME1Q9H400 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIME1Q9H400 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIME1Q9H400 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIME1Q9H400 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
LIME1Q9H400 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIME1Q9H400 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LIME1Q9H400 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.48■■□□□ 1.03
LIME1Q9H400 AL359258.2-201ENST00000564063 1566 ntBASIC21.48■■□□□ 1.03
LIME1Q9H400 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LIME1Q9H400 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
LIME1Q9H400 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.47■■□□□ 1.03
LIME1Q9H400 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.47■■□□□ 1.03
LIME1Q9H400 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
LIME1Q9H400 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.47■■□□□ 1.03
LIME1Q9H400 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.47■■□□□ 1.03
LIME1Q9H400 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LIME1Q9H400 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.47■■□□□ 1.03
LIME1Q9H400 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.47■■□□□ 1.03
LIME1Q9H400 BX255925.1-201ENST00000566954 1854 ntBASIC21.47■■□□□ 1.03
LIME1Q9H400 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.47■■□□□ 1.03
LIME1Q9H400 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
LIME1Q9H400 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.47■■□□□ 1.03
LIME1Q9H400 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LIME1Q9H400 SPCS2P3-201ENST00000500401 656 ntBASIC21.46■■□□□ 1.03
LIME1Q9H400 AC019069.1-201ENST00000610008 1333 ntBASIC21.46■■□□□ 1.03
LIME1Q9H400 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
LIME1Q9H400 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LIME1Q9H400 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
LIME1Q9H400 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.45■■□□□ 1.02
LIME1Q9H400 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LIME1Q9H400 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LIME1Q9H400 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LIME1Q9H400 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.45■■□□□ 1.02
LIME1Q9H400 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.45■■□□□ 1.02
LIME1Q9H400 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
LIME1Q9H400 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.44■■□□□ 1.02
LIME1Q9H400 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LIME1Q9H400 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.44■■□□□ 1.02
LIME1Q9H400 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LIME1Q9H400 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
LIME1Q9H400 AC009299.2-201ENST00000482477 511 ntBASIC21.44■■□□□ 1.02
LIME1Q9H400 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LIME1Q9H400 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LIME1Q9H400 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LIME1Q9H400 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.44■■□□□ 1.02
LIME1Q9H400 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.44■■□□□ 1.02
LIME1Q9H400 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LIME1Q9H400 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
LIME1Q9H400 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.43■■□□□ 1.02
LIME1Q9H400 AC131212.1-201ENST00000613771 668 ntBASIC21.43■■□□□ 1.02
LIME1Q9H400 AP004833.2-201ENST00000532228 1454 ntBASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms