Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.06■■□□□ 1.28
COL21A1Q96P44 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL21A1Q96P44 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL21A1Q96P44 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL21A1Q96P44 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.06■■□□□ 1.28
COL21A1Q96P44 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL21A1Q96P44 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 AP004609.3-201ENST00000610705 1884 ntBASIC23.05■■□□□ 1.28
COL21A1Q96P44 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
COL21A1Q96P44 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL21A1Q96P44 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL21A1Q96P44 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.03■■□□□ 1.28
COL21A1Q96P44 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL21A1Q96P44 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
COL21A1Q96P44 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
COL21A1Q96P44 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.02■■□□□ 1.28
COL21A1Q96P44 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL21A1Q96P44 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.02■■□□□ 1.28
COL21A1Q96P44 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL21A1Q96P44 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
COL21A1Q96P44 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL21A1Q96P44 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL21A1Q96P44 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL21A1Q96P44 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.01■■□□□ 1.27
COL21A1Q96P44 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL21A1Q96P44 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL21A1Q96P44 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL21A1Q96P44 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL21A1Q96P44 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL21A1Q96P44 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL21A1Q96P44 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL21A1Q96P44 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23■■□□□ 1.27
COL21A1Q96P44 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
COL21A1Q96P44 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL21A1Q96P44 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL21A1Q96P44 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL21A1Q96P44 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.99■■□□□ 1.27
COL21A1Q96P44 WHAMMP3-201ENST00000611636 1609 ntBASIC22.99■■□□□ 1.27
COL21A1Q96P44 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL21A1Q96P44 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL21A1Q96P44 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL21A1Q96P44 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
COL21A1Q96P44 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.98■■□□□ 1.27
COL21A1Q96P44 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL21A1Q96P44 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC22.98■■□□□ 1.27
COL21A1Q96P44 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
COL21A1Q96P44 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL21A1Q96P44 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL21A1Q96P44 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL21A1Q96P44 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.97■■□□□ 1.27
COL21A1Q96P44 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL21A1Q96P44 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL21A1Q96P44 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL21A1Q96P44 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.96■■□□□ 1.27
COL21A1Q96P44 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL21A1Q96P44 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.96■■□□□ 1.27
COL21A1Q96P44 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
COL21A1Q96P44 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL21A1Q96P44 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC22.96■■□□□ 1.27
COL21A1Q96P44 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
COL21A1Q96P44 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.96■■□□□ 1.27
COL21A1Q96P44 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL21A1Q96P44 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.96■■□□□ 1.27
COL21A1Q96P44 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC22.95■■□□□ 1.26
COL21A1Q96P44 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.95■■□□□ 1.26
COL21A1Q96P44 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.95■■□□□ 1.26
COL21A1Q96P44 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.94■■□□□ 1.26
COL21A1Q96P44 AC145676.1-201ENST00000514988 2004 ntBASIC22.94■■□□□ 1.26
COL21A1Q96P44 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.94■■□□□ 1.26
COL21A1Q96P44 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL21A1Q96P44 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL21A1Q96P44 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
COL21A1Q96P44 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL21A1Q96P44 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
COL21A1Q96P44 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC22.94■■□□□ 1.26
COL21A1Q96P44 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL21A1Q96P44 AC142472.1-201ENST00000612013 1741 ntBASIC22.94■■□□□ 1.26
COL21A1Q96P44 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL21A1Q96P44 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL21A1Q96P44 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL21A1Q96P44 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL21A1Q96P44 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.93■■□□□ 1.26
COL21A1Q96P44 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
COL21A1Q96P44 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC22.93■■□□□ 1.26
COL21A1Q96P44 SRP68-213ENST00000629930 165 ntTSL 5 BASIC22.93■■□□□ 1.26
COL21A1Q96P44 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.93■■□□□ 1.26
COL21A1Q96P44 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.93■■□□□ 1.26
COL21A1Q96P44 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
COL21A1Q96P44 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.92■■□□□ 1.26
COL21A1Q96P44 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL21A1Q96P44 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
COL21A1Q96P44 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms