Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.6■■□□□ 1.21
DEPDC4Q8N2C3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
DEPDC4Q8N2C3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DEPDC4Q8N2C3 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DEPDC4Q8N2C3 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.59■■□□□ 1.21
DEPDC4Q8N2C3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
DEPDC4Q8N2C3 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DEPDC4Q8N2C3 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.58■■□□□ 1.21
DEPDC4Q8N2C3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
DEPDC4Q8N2C3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
DEPDC4Q8N2C3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
DEPDC4Q8N2C3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC22.58■■□□□ 1.21
DEPDC4Q8N2C3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC22.58■■□□□ 1.21
DEPDC4Q8N2C3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
DEPDC4Q8N2C3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.57■■□□□ 1.2
DEPDC4Q8N2C3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DEPDC4Q8N2C3 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DEPDC4Q8N2C3 DUX4L11-201ENST00000611504 1267 ntBASIC22.57■■□□□ 1.2
DEPDC4Q8N2C3 DUX4L12-201ENST00000614593 1267 ntBASIC22.57■■□□□ 1.2
DEPDC4Q8N2C3 DUX4L14-201ENST00000621227 1267 ntBASIC22.57■■□□□ 1.2
DEPDC4Q8N2C3 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
DEPDC4Q8N2C3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
DEPDC4Q8N2C3 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
DEPDC4Q8N2C3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DEPDC4Q8N2C3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DEPDC4Q8N2C3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.56■■□□□ 1.2
DEPDC4Q8N2C3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.56■■□□□ 1.2
DEPDC4Q8N2C3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
DEPDC4Q8N2C3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
DEPDC4Q8N2C3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
DEPDC4Q8N2C3 WHAMMP2-203ENST00000563942 1603 ntBASIC22.55■■□□□ 1.2
DEPDC4Q8N2C3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
DEPDC4Q8N2C3 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
DEPDC4Q8N2C3 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DEPDC4Q8N2C3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.54■■□□□ 1.2
DEPDC4Q8N2C3 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
DEPDC4Q8N2C3 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.54■■□□□ 1.2
DEPDC4Q8N2C3 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC22.53■■□□□ 1.2
DEPDC4Q8N2C3 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.53■■□□□ 1.2
DEPDC4Q8N2C3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
DEPDC4Q8N2C3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
DEPDC4Q8N2C3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
DEPDC4Q8N2C3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
DEPDC4Q8N2C3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
DEPDC4Q8N2C3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
DEPDC4Q8N2C3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
DEPDC4Q8N2C3 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
DEPDC4Q8N2C3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.52■■□□□ 1.2
DEPDC4Q8N2C3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.52■■□□□ 1.2
DEPDC4Q8N2C3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
DEPDC4Q8N2C3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
DEPDC4Q8N2C3 CALM3-209ENST00000597743 577 ntTSL 4 BASIC22.51■■□□□ 1.19
DEPDC4Q8N2C3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.51■■□□□ 1.19
DEPDC4Q8N2C3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
DEPDC4Q8N2C3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 MIR3648-2-201ENST00000581792 180 ntBASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 MIR3648-1-201ENST00000615959 180 ntBASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
DEPDC4Q8N2C3 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
DEPDC4Q8N2C3 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
DEPDC4Q8N2C3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
DEPDC4Q8N2C3 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
DEPDC4Q8N2C3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
DEPDC4Q8N2C3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC22.49■■□□□ 1.19
DEPDC4Q8N2C3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
DEPDC4Q8N2C3 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
DEPDC4Q8N2C3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
DEPDC4Q8N2C3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.48■■□□□ 1.19
DEPDC4Q8N2C3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.19
DEPDC4Q8N2C3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.47■■□□□ 1.19
DEPDC4Q8N2C3 AC016575.1-201ENST00000607026 382 ntBASIC22.47■■□□□ 1.19
DEPDC4Q8N2C3 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
DEPDC4Q8N2C3 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
DEPDC4Q8N2C3 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
DEPDC4Q8N2C3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
DEPDC4Q8N2C3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
DEPDC4Q8N2C3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.46■■□□□ 1.19
DEPDC4Q8N2C3 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
DEPDC4Q8N2C3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC22.46■■□□□ 1.19
DEPDC4Q8N2C3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.46■■□□□ 1.19
DEPDC4Q8N2C3 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
DEPDC4Q8N2C3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
DEPDC4Q8N2C3 MIR639-201ENST00000384974 98 ntBASIC22.46■■□□□ 1.19
DEPDC4Q8N2C3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC22.46■■□□□ 1.19
DEPDC4Q8N2C3 AC142472.1-201ENST00000612013 1741 ntBASIC22.45■■□□□ 1.19
DEPDC4Q8N2C3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.45■■□□□ 1.18
DEPDC4Q8N2C3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.45■■□□□ 1.18
DEPDC4Q8N2C3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
DEPDC4Q8N2C3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
DEPDC4Q8N2C3 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms