Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTCHD4Q6ZW05 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
PTCHD4Q6ZW05 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.18
PTCHD4Q6ZW05 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
PTCHD4Q6ZW05 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.17
PTCHD4Q6ZW05 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
PTCHD4Q6ZW05 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC22.39■■□□□ 1.17
PTCHD4Q6ZW05 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC22.39■■□□□ 1.17
PTCHD4Q6ZW05 AC110285.7-201ENST00000624417 1536 ntBASIC22.39■■□□□ 1.17
PTCHD4Q6ZW05 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PTCHD4Q6ZW05 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PTCHD4Q6ZW05 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.39■■□□□ 1.17
PTCHD4Q6ZW05 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD4Q6ZW05 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
PTCHD4Q6ZW05 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD4Q6ZW05 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD4Q6ZW05 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD4Q6ZW05 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.37■■□□□ 1.17
PTCHD4Q6ZW05 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD4Q6ZW05 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD4Q6ZW05 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
PTCHD4Q6ZW05 AC142472.1-201ENST00000612013 1741 ntBASIC22.36■■□□□ 1.17
PTCHD4Q6ZW05 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD4Q6ZW05 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
PTCHD4Q6ZW05 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD4Q6ZW05 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD4Q6ZW05 DUX4L29-201ENST00000425409 679 ntBASIC22.35■■□□□ 1.17
PTCHD4Q6ZW05 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD4Q6ZW05 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD4Q6ZW05 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
PTCHD4Q6ZW05 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
PTCHD4Q6ZW05 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PTCHD4Q6ZW05 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
PTCHD4Q6ZW05 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.34■■□□□ 1.17
PTCHD4Q6ZW05 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD4Q6ZW05 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD4Q6ZW05 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
PTCHD4Q6ZW05 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD4Q6ZW05 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD4Q6ZW05 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD4Q6ZW05 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD4Q6ZW05 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD4Q6ZW05 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD4Q6ZW05 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD4Q6ZW05 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.31■■□□□ 1.16
PTCHD4Q6ZW05 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD4Q6ZW05 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD4Q6ZW05 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD4Q6ZW05 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
PTCHD4Q6ZW05 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
PTCHD4Q6ZW05 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC22.29■■□□□ 1.16
PTCHD4Q6ZW05 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD4Q6ZW05 RPS2P35-201ENST00000443417 897 ntBASIC22.29■■□□□ 1.16
PTCHD4Q6ZW05 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC22.29■■□□□ 1.16
PTCHD4Q6ZW05 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD4Q6ZW05 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD4Q6ZW05 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.28■■□□□ 1.16
PTCHD4Q6ZW05 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD4Q6ZW05 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC22.28■■□□□ 1.16
PTCHD4Q6ZW05 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.28■■□□□ 1.16
PTCHD4Q6ZW05 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD4Q6ZW05 ERN1-208ENST00000606895 2068 ntBASIC22.27■■□□□ 1.16
PTCHD4Q6ZW05 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD4Q6ZW05 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.27■■□□□ 1.16
PTCHD4Q6ZW05 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD4Q6ZW05 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
PTCHD4Q6ZW05 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD4Q6ZW05 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
PTCHD4Q6ZW05 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD4Q6ZW05 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD4Q6ZW05 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.25■■□□□ 1.15
PTCHD4Q6ZW05 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD4Q6ZW05 WHAMMP3-201ENST00000611636 1609 ntBASIC22.25■■□□□ 1.15
PTCHD4Q6ZW05 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD4Q6ZW05 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD4Q6ZW05 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD4Q6ZW05 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD4Q6ZW05 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD4Q6ZW05 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.24■■□□□ 1.15
PTCHD4Q6ZW05 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
PTCHD4Q6ZW05 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD4Q6ZW05 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PTCHD4Q6ZW05 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD4Q6ZW05 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD4Q6ZW05 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.23■■□□□ 1.15
PTCHD4Q6ZW05 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD4Q6ZW05 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
PTCHD4Q6ZW05 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD4Q6ZW05 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PTCHD4Q6ZW05 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PTCHD4Q6ZW05 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms