Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC58Q4VC31 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC58Q4VC31 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC58Q4VC31 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC58Q4VC31 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC58Q4VC31 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC58Q4VC31 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC58Q4VC31 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC58Q4VC31 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC58Q4VC31 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC58Q4VC31 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CCDC58Q4VC31 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC58Q4VC31 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC58Q4VC31 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC58Q4VC31 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC58Q4VC31 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC58Q4VC31 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC58Q4VC31 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC58Q4VC31 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC58Q4VC31 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC58Q4VC31 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC58Q4VC31 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC58Q4VC31 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CCDC58Q4VC31 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC58Q4VC31 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC58Q4VC31 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC58Q4VC31 WHAMMP3-201ENST00000611636 1609 ntBASIC21.7■■□□□ 1.06
CCDC58Q4VC31 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC58Q4VC31 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.7■■□□□ 1.06
CCDC58Q4VC31 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC58Q4VC31 DUX4L28-201ENST00000623687 678 ntBASIC21.7■■□□□ 1.06
CCDC58Q4VC31 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC58Q4VC31 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC58Q4VC31 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC58Q4VC31 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC58Q4VC31 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC58Q4VC31 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC58Q4VC31 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CCDC58Q4VC31 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC58Q4VC31 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC58Q4VC31 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC58Q4VC31 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC58Q4VC31 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC58Q4VC31 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC58Q4VC31 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CCDC58Q4VC31 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.68■■□□□ 1.06
CCDC58Q4VC31 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC58Q4VC31 AC110285.7-201ENST00000624417 1536 ntBASIC21.68■■□□□ 1.06
CCDC58Q4VC31 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
CCDC58Q4VC31 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.68■■□□□ 1.06
CCDC58Q4VC31 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CCDC58Q4VC31 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC58Q4VC31 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC58Q4VC31 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC58Q4VC31 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CCDC58Q4VC31 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CCDC58Q4VC31 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC58Q4VC31 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC58Q4VC31 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC58Q4VC31 AC133561.1-201ENST00000568600 2415 ntBASIC21.66■■□□□ 1.06
CCDC58Q4VC31 MIR3665-201ENST00000578708 105 ntBASIC21.66■■□□□ 1.06
CCDC58Q4VC31 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC58Q4VC31 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC58Q4VC31 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC58Q4VC31 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
CCDC58Q4VC31 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC58Q4VC31 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC58Q4VC31 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC58Q4VC31 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC58Q4VC31 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC58Q4VC31 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC58Q4VC31 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC58Q4VC31 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC58Q4VC31 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC58Q4VC31 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC58Q4VC31 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC58Q4VC31 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC58Q4VC31 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.63■■□□□ 1.05
CCDC58Q4VC31 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC58Q4VC31 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CCDC58Q4VC31 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
CCDC58Q4VC31 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms