Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.5
CCDC88AQ3V6T2 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30.65■■■□□ 2.5
CCDC88AQ3V6T2 PFN2-211ENST00000489155 636 ntTSL 4 BASIC30.65■■■□□ 2.5
CCDC88AQ3V6T2 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC30.65■■■□□ 2.5
CCDC88AQ3V6T2 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC30.65■■■□□ 2.5
CCDC88AQ3V6T2 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.65■■■□□ 2.5
CCDC88AQ3V6T2 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88AQ3V6T2 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88AQ3V6T2 ABCB10P1-201ENST00000614297 2181 ntBASIC30.64■■■□□ 2.5
CCDC88AQ3V6T2 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC88AQ3V6T2 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC88AQ3V6T2 AL359258.2-201ENST00000564063 1566 ntBASIC30.63■■■□□ 2.49
CCDC88AQ3V6T2 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC88AQ3V6T2 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC88AQ3V6T2 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC88AQ3V6T2 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC88AQ3V6T2 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC88AQ3V6T2 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC88AQ3V6T2 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.62■■■□□ 2.49
CCDC88AQ3V6T2 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC88AQ3V6T2 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC88AQ3V6T2 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88AQ3V6T2 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88AQ3V6T2 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88AQ3V6T2 IDNK-203ENST00000405990 629 ntTSL 2 BASIC30.6■■■□□ 2.49
CCDC88AQ3V6T2 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC30.6■■■□□ 2.49
CCDC88AQ3V6T2 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88AQ3V6T2 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC88AQ3V6T2 IDNK-201ENST00000376417 511 ntTSL 5 BASIC30.59■■■□□ 2.49
CCDC88AQ3V6T2 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC88AQ3V6T2 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC88AQ3V6T2 GRAMD4P7-201ENST00000578182 1232 ntBASIC30.59■■■□□ 2.49
CCDC88AQ3V6T2 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC88AQ3V6T2 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC88AQ3V6T2 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC88AQ3V6T2 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.58■■■□□ 2.49
CCDC88AQ3V6T2 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC88AQ3V6T2 AL139393.2-201ENST00000608721 2025 ntBASIC30.57■■■□□ 2.48
CCDC88AQ3V6T2 ABCB10P3-201ENST00000561950 2166 ntBASIC30.57■■■□□ 2.48
CCDC88AQ3V6T2 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC30.57■■■□□ 2.48
CCDC88AQ3V6T2 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC30.56■■■□□ 2.48
CCDC88AQ3V6T2 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88AQ3V6T2 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88AQ3V6T2 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88AQ3V6T2 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88AQ3V6T2 RNF146-205ENST00000477776 762 ntTSL 3 BASIC30.55■■■□□ 2.48
CCDC88AQ3V6T2 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.55■■■□□ 2.48
CCDC88AQ3V6T2 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.54■■■□□ 2.48
CCDC88AQ3V6T2 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.54■■■□□ 2.48
CCDC88AQ3V6T2 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
CCDC88AQ3V6T2 MIR3960-201ENST00000583311 91 ntBASIC30.54■■■□□ 2.48
CCDC88AQ3V6T2 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC88AQ3V6T2 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC30.53■■■□□ 2.48
CCDC88AQ3V6T2 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
CCDC88AQ3V6T2 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC30.53■■■□□ 2.48
CCDC88AQ3V6T2 MTX2-204ENST00000443241 799 ntTSL 3 BASIC30.53■■■□□ 2.48
CCDC88AQ3V6T2 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.53■■■□□ 2.48
CCDC88AQ3V6T2 AL031848.2-201ENST00000607670 837 ntBASIC30.51■■■□□ 2.47
CCDC88AQ3V6T2 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CCDC88AQ3V6T2 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC88AQ3V6T2 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC88AQ3V6T2 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC88AQ3V6T2 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC88AQ3V6T2 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
CCDC88AQ3V6T2 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CCDC88AQ3V6T2 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC30.48■■■□□ 2.47
CCDC88AQ3V6T2 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.48■■■□□ 2.47
CCDC88AQ3V6T2 Z92544.1-202ENST00000571933 1220 ntBASIC30.48■■■□□ 2.47
CCDC88AQ3V6T2 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC30.48■■■□□ 2.47
CCDC88AQ3V6T2 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC88AQ3V6T2 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
CCDC88AQ3V6T2 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC88AQ3V6T2 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.47■■■□□ 2.47
CCDC88AQ3V6T2 AC008406.3-201ENST00000620001 1374 ntBASIC30.47■■■□□ 2.47
CCDC88AQ3V6T2 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC88AQ3V6T2 AC239859.2-201ENST00000444165 318 ntBASIC30.46■■■□□ 2.47
CCDC88AQ3V6T2 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC30.46■■■□□ 2.47
CCDC88AQ3V6T2 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC30.46■■■□□ 2.47
CCDC88AQ3V6T2 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
CCDC88AQ3V6T2 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CCDC88AQ3V6T2 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
CCDC88AQ3V6T2 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88AQ3V6T2 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CCDC88AQ3V6T2 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
CCDC88AQ3V6T2 AP002414.2-202ENST00000590929 1450 ntBASIC30.44■■■□□ 2.46
CCDC88AQ3V6T2 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.43■■■□□ 2.46
CCDC88AQ3V6T2 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88AQ3V6T2 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC30.43■■■□□ 2.46
CCDC88AQ3V6T2 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC88AQ3V6T2 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.43■■■□□ 2.46
CCDC88AQ3V6T2 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC88AQ3V6T2 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.42■■■□□ 2.46
CCDC88AQ3V6T2 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.42■■■□□ 2.46
CCDC88AQ3V6T2 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC88AQ3V6T2 MIR638-201ENST00000385237 100 ntBASIC30.42■■■□□ 2.46
CCDC88AQ3V6T2 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC88AQ3V6T2 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.41■■■□□ 2.46
CCDC88AQ3V6T2 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
CCDC88AQ3V6T2 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC30.41■■■□□ 2.46
CCDC88AQ3V6T2 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms