Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
COL28A1Q2UY09 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.36
COL28A1Q2UY09 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.58■■□□□ 1.36
COL28A1Q2UY09 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
COL28A1Q2UY09 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
COL28A1Q2UY09 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL28A1Q2UY09 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL28A1Q2UY09 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.57■■□□□ 1.36
COL28A1Q2UY09 MIR4508-201ENST00000584178 70 ntBASIC23.57■■□□□ 1.36
COL28A1Q2UY09 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
COL28A1Q2UY09 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.57■■□□□ 1.36
COL28A1Q2UY09 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
COL28A1Q2UY09 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL28A1Q2UY09 HYI-210ENST00000486909 905 ntTSL 5 BASIC23.56■■□□□ 1.36
COL28A1Q2UY09 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.56■■□□□ 1.36
COL28A1Q2UY09 AL031848.2-201ENST00000607670 837 ntBASIC23.56■■□□□ 1.36
COL28A1Q2UY09 MIR6765-201ENST00000614092 87 ntBASIC23.56■■□□□ 1.36
COL28A1Q2UY09 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
COL28A1Q2UY09 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.56■■□□□ 1.36
COL28A1Q2UY09 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
COL28A1Q2UY09 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.55■■□□□ 1.36
COL28A1Q2UY09 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
COL28A1Q2UY09 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL28A1Q2UY09 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL28A1Q2UY09 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
COL28A1Q2UY09 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
COL28A1Q2UY09 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.55■■□□□ 1.36
COL28A1Q2UY09 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL28A1Q2UY09 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL28A1Q2UY09 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
COL28A1Q2UY09 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC23.53■■□□□ 1.36
COL28A1Q2UY09 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL28A1Q2UY09 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL28A1Q2UY09 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.53■■□□□ 1.36
COL28A1Q2UY09 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL28A1Q2UY09 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.52■■□□□ 1.36
COL28A1Q2UY09 AC239859.2-201ENST00000444165 318 ntBASIC23.52■■□□□ 1.36
COL28A1Q2UY09 AC103724.3-201ENST00000564481 992 ntBASIC23.52■■□□□ 1.36
COL28A1Q2UY09 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL28A1Q2UY09 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL28A1Q2UY09 AP004833.2-201ENST00000532228 1454 ntBASIC23.51■■□□□ 1.35
COL28A1Q2UY09 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL28A1Q2UY09 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL28A1Q2UY09 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.51■■□□□ 1.35
COL28A1Q2UY09 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23.51■■□□□ 1.35
COL28A1Q2UY09 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC23.51■■□□□ 1.35
COL28A1Q2UY09 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.51■■□□□ 1.35
COL28A1Q2UY09 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL28A1Q2UY09 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL28A1Q2UY09 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL28A1Q2UY09 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL28A1Q2UY09 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL28A1Q2UY09 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.5■■□□□ 1.35
COL28A1Q2UY09 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC23.5■■□□□ 1.35
COL28A1Q2UY09 GRAMD4P7-201ENST00000578182 1232 ntBASIC23.5■■□□□ 1.35
COL28A1Q2UY09 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL28A1Q2UY09 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL28A1Q2UY09 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC23.5■■□□□ 1.35
COL28A1Q2UY09 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.49■■□□□ 1.35
COL28A1Q2UY09 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
COL28A1Q2UY09 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL28A1Q2UY09 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
COL28A1Q2UY09 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL28A1Q2UY09 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC23.48■■□□□ 1.35
COL28A1Q2UY09 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.48■■□□□ 1.35
COL28A1Q2UY09 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
COL28A1Q2UY09 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
COL28A1Q2UY09 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.47■■□□□ 1.35
COL28A1Q2UY09 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.46■■□□□ 1.35
COL28A1Q2UY09 AC093536.1-201ENST00000569153 554 ntBASIC23.46■■□□□ 1.35
COL28A1Q2UY09 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC23.46■■□□□ 1.35
COL28A1Q2UY09 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.45■■□□□ 1.35
COL28A1Q2UY09 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
COL28A1Q2UY09 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
COL28A1Q2UY09 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
COL28A1Q2UY09 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
COL28A1Q2UY09 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.45■■□□□ 1.34
COL28A1Q2UY09 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 RAP2CP1-202ENST00000605179 643 ntBASIC23.44■■□□□ 1.34
COL28A1Q2UY09 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
COL28A1Q2UY09 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
COL28A1Q2UY09 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.43■■□□□ 1.34
COL28A1Q2UY09 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.43■■□□□ 1.34
COL28A1Q2UY09 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.43■■□□□ 1.34
COL28A1Q2UY09 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
COL28A1Q2UY09 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
COL28A1Q2UY09 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
COL28A1Q2UY09 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.41■■□□□ 1.34
COL28A1Q2UY09 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.41■■□□□ 1.34
COL28A1Q2UY09 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.41■■□□□ 1.34
COL28A1Q2UY09 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 1049.2 ms