Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CL1P78423 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CX3CL1P78423 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CL1P78423 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CL1P78423 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CL1P78423 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CL1P78423 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CL1P78423 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CX3CL1P78423 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.66■□□□□ 0.74
CX3CL1P78423 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.66■□□□□ 0.74
CX3CL1P78423 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CX3CL1P78423 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.65■□□□□ 0.74
CX3CL1P78423 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CX3CL1P78423 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CX3CL1P78423 MIR4449-201ENST00000578365 66 ntBASIC19.64■□□□□ 0.73
CX3CL1P78423 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.64■□□□□ 0.73
CX3CL1P78423 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CX3CL1P78423 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CX3CL1P78423 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CX3CL1P78423 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CX3CL1P78423 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.63■□□□□ 0.73
CX3CL1P78423 AL359258.2-201ENST00000564063 1566 ntBASIC19.63■□□□□ 0.73
CX3CL1P78423 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CX3CL1P78423 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.63■□□□□ 0.73
CX3CL1P78423 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CX3CL1P78423 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CX3CL1P78423 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CX3CL1P78423 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CX3CL1P78423 AC126177.7-201ENST00000547904 679 ntBASIC19.62■□□□□ 0.73
CX3CL1P78423 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CX3CL1P78423 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CX3CL1P78423 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CX3CL1P78423 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.61■□□□□ 0.73
CX3CL1P78423 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CX3CL1P78423 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.61■□□□□ 0.73
CX3CL1P78423 MED25-210ENST00000612854 801 ntTSL 5 BASIC19.61■□□□□ 0.73
CX3CL1P78423 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CX3CL1P78423 MED25-214ENST00000622402 642 ntTSL 5 BASIC19.61■□□□□ 0.73
CX3CL1P78423 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
CX3CL1P78423 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CX3CL1P78423 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CX3CL1P78423 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CX3CL1P78423 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CX3CL1P78423 PKM-203ENST00000389093 2279 ntTSL 5 BASIC19.59■□□□□ 0.73
CX3CL1P78423 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CX3CL1P78423 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CX3CL1P78423 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.59■□□□□ 0.73
CX3CL1P78423 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.59■□□□□ 0.73
CX3CL1P78423 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CX3CL1P78423 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC19.59■□□□□ 0.73
CX3CL1P78423 AP004609.3-201ENST00000610705 1884 ntBASIC19.58■□□□□ 0.73
CX3CL1P78423 PKM-204ENST00000449901 2526 ntTSL 2 BASIC19.58■□□□□ 0.73
CX3CL1P78423 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.58■□□□□ 0.73
CX3CL1P78423 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CX3CL1P78423 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CX3CL1P78423 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CX3CL1P78423 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CX3CL1P78423 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CX3CL1P78423 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.57■□□□□ 0.72
CX3CL1P78423 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CX3CL1P78423 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.57■□□□□ 0.72
CX3CL1P78423 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CX3CL1P78423 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CX3CL1P78423 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CX3CL1P78423 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CX3CL1P78423 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CX3CL1P78423 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.56■□□□□ 0.72
CX3CL1P78423 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CX3CL1P78423 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.56■□□□□ 0.72
CX3CL1P78423 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CX3CL1P78423 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CX3CL1P78423 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CX3CL1P78423 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CX3CL1P78423 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CX3CL1P78423 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CX3CL1P78423 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.55■□□□□ 0.72
CX3CL1P78423 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CX3CL1P78423 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CX3CL1P78423 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CX3CL1P78423 AC142472.1-201ENST00000612013 1741 ntBASIC19.54■□□□□ 0.72
CX3CL1P78423 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CX3CL1P78423 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CX3CL1P78423 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.54■□□□□ 0.72
CX3CL1P78423 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CX3CL1P78423 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CX3CL1P78423 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.53■□□□□ 0.72
CX3CL1P78423 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.53■□□□□ 0.72
CX3CL1P78423 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CX3CL1P78423 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.53■□□□□ 0.72
CX3CL1P78423 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CX3CL1P78423 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CX3CL1P78423 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CX3CL1P78423 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CX3CL1P78423 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.52■□□□□ 0.72
CX3CL1P78423 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CX3CL1P78423 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.51■□□□□ 0.71
CX3CL1P78423 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CX3CL1P78423 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CX3CL1P78423 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CX3CL1P78423 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms