Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CACNA1FO60840 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CACNA1FO60840 NTF6A-201ENST00000591175 560 ntBASIC31.38■■■□□ 2.61
CACNA1FO60840 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CACNA1FO60840 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CACNA1FO60840 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CACNA1FO60840 KRT18P60-201ENST00000312876 1297 ntBASIC31.36■■■□□ 2.61
CACNA1FO60840 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CACNA1FO60840 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
CACNA1FO60840 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.36■■■□□ 2.61
CACNA1FO60840 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CACNA1FO60840 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CACNA1FO60840 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.35■■■□□ 2.61
CACNA1FO60840 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CACNA1FO60840 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
CACNA1FO60840 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
CACNA1FO60840 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
CACNA1FO60840 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CACNA1FO60840 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CACNA1FO60840 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
CACNA1FO60840 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
CACNA1FO60840 GFER-205ENST00000569451 517 ntTSL 5 BASIC31.34■■■□□ 2.61
CACNA1FO60840 MIR3960-201ENST00000583311 91 ntBASIC31.34■■■□□ 2.61
CACNA1FO60840 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CACNA1FO60840 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC31.33■■■□□ 2.61
CACNA1FO60840 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.33■■■□□ 2.61
CACNA1FO60840 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.33■■■□□ 2.61
CACNA1FO60840 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CACNA1FO60840 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
CACNA1FO60840 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.3■■■□□ 2.6
CACNA1FO60840 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
CACNA1FO60840 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
CACNA1FO60840 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
CACNA1FO60840 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CACNA1FO60840 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC31.3■■■□□ 2.6
CACNA1FO60840 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CACNA1FO60840 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
CACNA1FO60840 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
CACNA1FO60840 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
CACNA1FO60840 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC31.28■■■□□ 2.6
CACNA1FO60840 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
CACNA1FO60840 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
CACNA1FO60840 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
CACNA1FO60840 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
CACNA1FO60840 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CACNA1FO60840 AC026202.3-201ENST00000600805 1127 ntBASIC31.26■■■□□ 2.6
CACNA1FO60840 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.6
CACNA1FO60840 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.26■■■□□ 2.59
CACNA1FO60840 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
CACNA1FO60840 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
CACNA1FO60840 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CACNA1FO60840 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CACNA1FO60840 RP9P-202ENST00000450133 1212 ntBASIC31.25■■■□□ 2.59
CACNA1FO60840 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CACNA1FO60840 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC31.25■■■□□ 2.59
CACNA1FO60840 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
CACNA1FO60840 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
CACNA1FO60840 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
CACNA1FO60840 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CACNA1FO60840 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC31.24■■■□□ 2.59
CACNA1FO60840 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
CACNA1FO60840 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
CACNA1FO60840 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.23■■■□□ 2.59
CACNA1FO60840 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CACNA1FO60840 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC31.23■■■□□ 2.59
CACNA1FO60840 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
CACNA1FO60840 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CACNA1FO60840 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CACNA1FO60840 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
CACNA1FO60840 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
CACNA1FO60840 AC009831.1-201ENST00000580420 1582 ntBASIC31.22■■■□□ 2.59
CACNA1FO60840 AC133552.2-201ENST00000619106 1032 ntBASIC31.21■■■□□ 2.59
CACNA1FO60840 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CACNA1FO60840 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
CACNA1FO60840 AP004609.3-201ENST00000610705 1884 ntBASIC31.21■■■□□ 2.59
CACNA1FO60840 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
CACNA1FO60840 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
CACNA1FO60840 AL592293.1-201ENST00000502889 1188 ntBASIC31.2■■■□□ 2.59
CACNA1FO60840 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.2■■■□□ 2.59
CACNA1FO60840 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC31.19■■■□□ 2.58
CACNA1FO60840 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CACNA1FO60840 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CACNA1FO60840 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CACNA1FO60840 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
CACNA1FO60840 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
CACNA1FO60840 U85056.1-201ENST00000616429 682 ntBASIC31.19■■■□□ 2.58
CACNA1FO60840 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
CACNA1FO60840 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
CACNA1FO60840 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
CACNA1FO60840 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC31.17■■■□□ 2.58
CACNA1FO60840 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CACNA1FO60840 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CACNA1FO60840 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CACNA1FO60840 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
CACNA1FO60840 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CACNA1FO60840 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
CACNA1FO60840 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC31.16■■■□□ 2.58
CACNA1FO60840 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.16■■■□□ 2.58
CACNA1FO60840 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.16■■■□□ 2.58
CACNA1FO60840 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC31.16■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms