Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 AC090616.6-201ENST00000582640 721 ntBASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CCDC65Q8IXS2 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC65Q8IXS2 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 RN7SL606P-201ENST00000472779 293 ntBASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 AL592071.1-201ENST00000611956 408 ntBASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 IGHV3-41-201ENST00000613121 348 ntBASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 AC124864.1-201ENST00000623408 392 ntBASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
CCDC65Q8IXS2 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
CCDC65Q8IXS2 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC65Q8IXS2 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC65Q8IXS2 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
CCDC65Q8IXS2 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 BX276092.5-203ENST00000456199 560 ntBASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 AL121672.3-201ENST00000608644 468 ntBASIC19.76■□□□□ 0.75
CCDC65Q8IXS2 AC116407.4-201ENST00000623319 1061 ntBASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms