Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SDC3O75056 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SDC3O75056 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SDC3O75056 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.38■□□□□ 0.37
SDC3O75056 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SDC3O75056 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDC3O75056 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.38■□□□□ 0.37
SDC3O75056 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SDC3O75056 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SDC3O75056 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SDC3O75056 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SDC3O75056 LAGE3P1-201ENST00000425356 484 ntBASIC17.38■□□□□ 0.37
SDC3O75056 AC092183.1-201ENST00000469884 875 ntBASIC17.38■□□□□ 0.37
SDC3O75056 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.38■□□□□ 0.37
SDC3O75056 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.38■□□□□ 0.37
SDC3O75056 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SDC3O75056 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.38■□□□□ 0.37
SDC3O75056 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.38■□□□□ 0.37
SDC3O75056 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.38■□□□□ 0.37
SDC3O75056 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.38■□□□□ 0.37
SDC3O75056 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDC3O75056 AL691403.2-201ENST00000618460 490 ntBASIC17.38■□□□□ 0.37
SDC3O75056 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.38■□□□□ 0.37
SDC3O75056 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.38■□□□□ 0.37
SDC3O75056 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDC3O75056 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.38■□□□□ 0.37
SDC3O75056 AC079776.2-201ENST00000641154 1609 ntBASIC17.38■□□□□ 0.37
SDC3O75056 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDC3O75056 AC097374.2-201ENST00000618617 1306 ntBASIC17.38■□□□□ 0.37
SDC3O75056 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.38■□□□□ 0.37
SDC3O75056 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDC3O75056 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.38■□□□□ 0.37
SDC3O75056 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDC3O75056 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.38■□□□□ 0.37
SDC3O75056 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 AC005104.2-201ENST00000427818 678 ntBASIC17.37■□□□□ 0.37
SDC3O75056 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.37■□□□□ 0.37
SDC3O75056 AL591424.1-201ENST00000442569 1213 ntBASIC17.37■□□□□ 0.37
SDC3O75056 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.37■□□□□ 0.37
SDC3O75056 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.37■□□□□ 0.37
SDC3O75056 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.37■□□□□ 0.37
SDC3O75056 AL022326.1-202ENST00000641533 845 ntBASIC17.37■□□□□ 0.37
SDC3O75056 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SDC3O75056 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDC3O75056 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.37■□□□□ 0.37
SDC3O75056 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.36■□□□□ 0.37
SDC3O75056 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
SDC3O75056 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 PMPCAP1-201ENST00000508114 1576 ntBASIC17.36■□□□□ 0.37
SDC3O75056 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.36■□□□□ 0.37
SDC3O75056 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SDC3O75056 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.36■□□□□ 0.37
SDC3O75056 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 SIRPAP1-201ENST00000448467 1770 ntBASIC17.36■□□□□ 0.37
SDC3O75056 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.36■□□□□ 0.37
SDC3O75056 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.36■□□□□ 0.37
SDC3O75056 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.36■□□□□ 0.37
SDC3O75056 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 AC055717.3-201ENST00000622967 595 ntBASIC17.36■□□□□ 0.37
SDC3O75056 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.36■□□□□ 0.37
SDC3O75056 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDC3O75056 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms