Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.96■□□□□ 0.47
TRIM38O00635 AL353801.3-201ENST00000609898 542 ntBASIC17.96■□□□□ 0.47
TRIM38O00635 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.96■□□□□ 0.47
TRIM38O00635 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.96■□□□□ 0.47
TRIM38O00635 AC134043.2-201ENST00000624206 2238 ntBASIC17.96■□□□□ 0.47
TRIM38O00635 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
TRIM38O00635 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TRIM38O00635 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.96■□□□□ 0.47
TRIM38O00635 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
TRIM38O00635 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM38O00635 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM38O00635 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM38O00635 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.95■□□□□ 0.46
TRIM38O00635 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM38O00635 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM38O00635 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM38O00635 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM38O00635 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM38O00635 GUSBP12-201ENST00000513727 720 ntBASIC17.95■□□□□ 0.46
TRIM38O00635 SLC25A6P4-201ENST00000586535 553 ntBASIC17.95■□□□□ 0.46
TRIM38O00635 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM38O00635 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.95■□□□□ 0.46
TRIM38O00635 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
TRIM38O00635 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.95■□□□□ 0.46
TRIM38O00635 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TRIM38O00635 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM38O00635 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM38O00635 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 AL022342.1-201ENST00000400363 863 ntBASIC17.94■□□□□ 0.46
TRIM38O00635 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
TRIM38O00635 AC091607.1-201ENST00000490318 1060 ntBASIC17.94■□□□□ 0.46
TRIM38O00635 AC106795.1-205ENST00000512851 1056 ntBASIC17.94■□□□□ 0.46
TRIM38O00635 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.94■□□□□ 0.46
TRIM38O00635 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM38O00635 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.94■□□□□ 0.46
TRIM38O00635 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.94■□□□□ 0.46
TRIM38O00635 AL121912.1-201ENST00000603683 238 ntBASIC17.94■□□□□ 0.46
TRIM38O00635 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TRIM38O00635 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
TRIM38O00635 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
TRIM38O00635 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.94■□□□□ 0.46
TRIM38O00635 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
TRIM38O00635 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TRIM38O00635 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TRIM38O00635 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM38O00635 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 AL353692.3-201ENST00000407031 1396 ntBASIC17.93■□□□□ 0.46
TRIM38O00635 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
TRIM38O00635 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM38O00635 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM38O00635 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.93■□□□□ 0.46
TRIM38O00635 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
TRIM38O00635 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
TRIM38O00635 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM38O00635 MRPL3P1-201ENST00000400109 1033 ntBASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms