Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 AC055717.3-201ENST00000622967 595 ntBASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NOTCH3Q9UM47 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 AC010327.4-202ENST00000591484 748 ntBASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 AC008608.2-201ENST00000606089 416 ntBASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NOTCH3Q9UM47 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 HLA-J-201ENST00000462773 1622 ntBASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 DANCR-204ENST00000444958 709 ntTSL 3 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 SCARNA2-201ENST00000458748 420 ntBASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 AP001160.2-201ENST00000596071 487 ntBASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 AP001269.4-201ENST00000609611 512 ntBASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NOTCH3Q9UM47 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms