Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.96■□□□□ 0.95
DDX4Q9NQI0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 AC109462.3-201ENST00000573934 613 ntBASIC20.96■□□□□ 0.95
DDX4Q9NQI0 AC004706.3-202ENST00000621574 984 ntBASIC20.96■□□□□ 0.95
DDX4Q9NQI0 AL020996.1-203ENST00000536896 2307 ntBASIC20.96■□□□□ 0.95
DDX4Q9NQI0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DDX4Q9NQI0 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 AC136632.2-201ENST00000512891 861 ntBASIC20.95■□□□□ 0.94
DDX4Q9NQI0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 AL589182.2-201ENST00000619332 1049 ntBASIC20.95■□□□□ 0.94
DDX4Q9NQI0 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DDX4Q9NQI0 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 AC104581.1-202ENST00000635932 2618 ntBASIC20.94■□□□□ 0.94
DDX4Q9NQI0 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 MIR1199-201ENST00000621445 119 ntBASIC20.94■□□□□ 0.94
DDX4Q9NQI0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
DDX4Q9NQI0 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 YBX2P1-201ENST00000394192 760 ntBASIC20.93■□□□□ 0.94
DDX4Q9NQI0 KLF4P1-201ENST00000412782 1185 ntBASIC20.93■□□□□ 0.94
DDX4Q9NQI0 AC005104.2-201ENST00000427818 678 ntBASIC20.93■□□□□ 0.94
DDX4Q9NQI0 AC108751.1-201ENST00000490852 363 ntBASIC20.93■□□□□ 0.94
DDX4Q9NQI0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 AC005593.1-201ENST00000624894 515 ntBASIC20.93■□□□□ 0.94
DDX4Q9NQI0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
DDX4Q9NQI0 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms