Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NEK1Q96PY6 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
NEK1Q96PY6 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.13■□□□□ 0.97
NEK1Q96PY6 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NEK1Q96PY6 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.12■□□□□ 0.97
NEK1Q96PY6 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.12■□□□□ 0.97
NEK1Q96PY6 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NEK1Q96PY6 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.12■□□□□ 0.97
NEK1Q96PY6 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.12■□□□□ 0.97
NEK1Q96PY6 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
NEK1Q96PY6 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NEK1Q96PY6 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 AC138932.1-201ENST00000534164 6830 ntBASIC21.11■□□□□ 0.97
NEK1Q96PY6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 KRT8P26-201ENST00000534154 1276 ntBASIC21.11■□□□□ 0.97
NEK1Q96PY6 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 REXO1L11P-201ENST00000620964 1927 ntBASIC21.11■□□□□ 0.97
NEK1Q96PY6 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 HTR7P1-202ENST00000624664 4411 ntBASIC21.11■□□□□ 0.97
NEK1Q96PY6 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
NEK1Q96PY6 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NEK1Q96PY6 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK1Q96PY6 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NEK1Q96PY6 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NEK1Q96PY6 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 AC087388.1-201ENST00000571370 1112 ntBASIC21.1■□□□□ 0.97
NEK1Q96PY6 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK1Q96PY6 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NEK1Q96PY6 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
NEK1Q96PY6 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NEK1Q96PY6 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK1Q96PY6 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK1Q96PY6 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK1Q96PY6 LINC00304-203ENST00000565008 1864 ntBASIC21.09■□□□□ 0.97
NEK1Q96PY6 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK1Q96PY6 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK1Q96PY6 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 AL592071.1-201ENST00000611956 408 ntBASIC21.09■□□□□ 0.97
NEK1Q96PY6 IGHV3-41-201ENST00000613121 348 ntBASIC21.09■□□□□ 0.97
NEK1Q96PY6 AC124864.1-201ENST00000623408 392 ntBASIC21.09■□□□□ 0.97
NEK1Q96PY6 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NEK1Q96PY6 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NEK1Q96PY6 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NEK1Q96PY6 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms