Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NIPAL3Q6P499 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NIPAL3Q6P499 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 PKD1P1-201ENST00000458669 6805 ntBASIC16.26■□□□□ 0.19
NIPAL3Q6P499 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 PCDHA12-202ENST00000613593 2588 ntBASIC16.26■□□□□ 0.19
NIPAL3Q6P499 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 PVRIG2P-201ENST00000435460 978 ntBASIC16.26■□□□□ 0.19
NIPAL3Q6P499 AC063952.2-201ENST00000498792 1227 ntBASIC16.26■□□□□ 0.19
NIPAL3Q6P499 AC022616.7-201ENST00000525383 220 ntBASIC16.26■□□□□ 0.19
NIPAL3Q6P499 LINC01238-205ENST00000567549 1107 ntBASIC16.26■□□□□ 0.19
NIPAL3Q6P499 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NIPAL3Q6P499 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 AL024508.2-201ENST00000607749 1894 ntBASIC16.25■□□□□ 0.19
NIPAL3Q6P499 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.25■□□□□ 0.19
NIPAL3Q6P499 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 KRT18P38-201ENST00000449496 1282 ntBASIC16.25■□□□□ 0.19
NIPAL3Q6P499 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 AL049597.2-201ENST00000565575 961 ntBASIC16.25■□□□□ 0.19
NIPAL3Q6P499 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NIPAL3Q6P499 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms